Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06477 ATGGCGGATTCTCCAGTAAGAAGGCTTTCAAGGTCTCCTTCCCCATGGAGGGGTCAATCAAGATCTAGGTCTAGGTCGAGATCTCGGTCAAGGTCTCTCGAAAAGCCTAGGCTTAGGTCTCGGTCAAGATCTATTGAAATGCAAAGGCCTAGGTCTCCCTCGAGAGGTCGTGGCAGATCAAGATCAAGAAGTCCTCCTGACAGGAATGGGGGAGATACACTTTATGTTACTGGCTTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGCATATCTCGTGGTTTTGCATTTGTTACTATGGATTCTGTTGAGGATGCAAACCGCTGTATCAAGCACCTGAATCAATCCGTTTTAGAGGGTCGCTATATCACTGTTGATCGGTCAAAGAGAAAGAGGCCAAGAACTCCCACACCTGGGCACTATCTTGGGCTGAAAAACACTAGAGAAATTGGATATCGCGATGATCGTGGAGGCGGAGGAAGGTACCGCGGTGGATATGGTCGTGATGATTATCCATACCGTCGGTCTCCAAGGCACTCACCATATCGAGGTGGCAGAGATTATTCACCACCAAGGCACTCTCCCTATGGTGGTGGAAGGTATAGGAGGGAGAGGTCTAGGTCACCTTATGCTCCATATGGCAGCCCAGATAGGAGGTATGCTCGGGGGCCTAGGTGA 738 0.4973 MADSPVRRLSRSPSPWRGQSRSRSRSRSRSRSLEKPRLRSRSRSIEMQRPRSPSRGRGRSRSRSPPDRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKHLNQSVLEGRYITVDRSKRKRPRTPTPGHYLGLKNTREIGYRDDRGGGGRYRGGYGRDDYPYRRSPRHSPYRGGRDYSPPRHSPYGGGRYRRERSRSPYAPYGSPDRRYARGPR 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06477 245 MobiDBLite consensus disorder prediction 27 53 - -
Vifa1g06477 245 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 60 239 - -
Vifa1g06477 245 MobiDBLite consensus disorder prediction 147 245 - -
Vifa1g06477 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 72 150 IPR000504 GO:0003723
Vifa1g06477 245 MobiDBLite consensus disorder prediction 167 206 - -
Vifa1g06477 245 MobiDBLite consensus disorder prediction 1 80 - -
Vifa1g06477 245 SUPERFAMILY RNA-binding domain, RBD 48 162 IPR035979 GO:0003676
Vifa1g06477 245 CDD RRM_SF 74 146 - -
Vifa1g06477 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 74 143 IPR000504 GO:0003723
Vifa1g06477 245 SMART rrm1_1 73 146 IPR000504 GO:0003723
Vifa1g06477 245 Gene3D - 14 157 IPR012677 -
Vifa1g06477 245 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06477 Vifa-Chr1 1004789103 1004791377 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06477 68 157 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 1.79e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06477 K12897 - gmx:100527350 254.603