Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06476 ATGGCGGATTCTCCAGTAAGAAGGCTTTCAAGGTCTCCTTCCCCATGGAGGGGTCAATCAAGATCTAGGTCTAGGTCGAGATCTCGGTCAAGGTCTCTCGAAAAGCCTAGGCTTAGGTCTCGGTCAAGATCTATTGAAATGCAAAGGCCTAGGTCTCCCTCGAGAGGTCGTGGCAGATCAAGATCAAGAAGTCCTCCTGACAGTTTTGTGATTTTGTGTTGTGTTAGGAATGGGGGAGATACACTTTATGTTACTGGCTTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAAGGAAAGGTTGCTTCATGTTTTCTTGTGGTGGAGCCCCGTACGCGCATATCTCGTGGTTTTGCATTTGTTACTATGGATTCTGTTGAGGATGCAAACCGCTGTATCAAGCACCTGAATCAATCCGTTTTAGAGGGTCGCTATATCACTGTTGATCGGTCAAAGAGAAAGAGGCCAAGAACTCCCACACCTGGGCACTATCTTGGGCTGAAAAACACTAGAGAAATTGGATATCGCGATGATCGTGGAGGCGGAGGAAGGTACCGCGGTGGATATGGTCGTGATGATTATCCATACCGTCGGTCTCCAAGGCACTCACCATATCGAGGTGGCAGAGATTATTCACCACCAAGGCACTCTCCCTATGGTGGTGGAAGGTATAGGAGGGAGAGGTCTAGGTCACCTTATGCTCCATATGGCAGCCCAGATAGGAGGTATGCTCGGGGGCCTAGGTGA 762 0.4908 MADSPVRRLSRSPSPWRGQSRSRSRSRSRSRSLEKPRLRSRSRSIEMQRPRSPSRGRGRSRSRSPPDSFVILCCVRNGGDTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFVTMDSVEDANRCIKHLNQSVLEGRYITVDRSKRKRPRTPTPGHYLGLKNTREIGYRDDRGGGGRYRGGYGRDDYPYRRSPRHSPYRGGRDYSPPRHSPYGGGRYRRERSRSPYAPYGSPDRRYARGPR 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06476 253 Gene3D - 13 165 IPR012677 -
Vifa1g06476 253 MobiDBLite consensus disorder prediction 27 53 - -
Vifa1g06476 253 MobiDBLite consensus disorder prediction 154 253 - -
Vifa1g06476 253 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 3 164 - -
Vifa1g06476 253 SUPERFAMILY RNA-binding domain, RBD 77 170 IPR035979 GO:0003676
Vifa1g06476 253 MobiDBLite consensus disorder prediction 1 65 - -
Vifa1g06476 253 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 158 IPR000504 GO:0003723
Vifa1g06476 253 MobiDBLite consensus disorder prediction 175 214 - -
Vifa1g06476 253 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 151 IPR000504 GO:0003723
Vifa1g06476 253 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 60 247 - -
Vifa1g06476 253 CDD RRM_SF 82 154 - -
Vifa1g06476 253 SMART rrm1_1 81 154 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06476 Vifa-Chr1 1004789103 1004791377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06476 76 165 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 1.65e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06476 K12897 - gmx:100527350 255.373