Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06469 ATGGTGATCGAGAACGACATTGAGAGTTGCGGAAGTAGAGCGGTGCAGTCGCATCCGAATCCTCGTCACCACCGTCAGAAGCTTGAGGTTTACAATGAGGTGCTTCGTCGAATTCAGGATTCCGATTGTGAAGAAGCTCATGTTCCTGGTTTCGATGATCAGCTATGGCTTCACTTCAATCGTCTTCCTGCTAGGTATGCATTGGATGTGAATGTGGAGAGAGCAGAAGATGTTCTTGCTCATAAAAGATTGCTCGAGTTGGCAGAAGATCCTGCTAATCGTCCCGCGTTTCAAGTTCGTTTAGTACAGGTATATCCTTTTGGTAGTGCAAATCATAATGATTCTTCCATGCATTCAAATCATTCTGAGAAAGAAGATGCACAGAGTTCCCTTAACTATTCTTTAAAGCAGGGAATTCATGCACCACCTACGTTTGGTTCTTCCTCTAACCTTGAAGCTCTTGCCCTTCAAACAAATAAAAATAACATTGAAGATGGAGACAATCCTATGGGTGTGACGCCAAACTTTAACCGGCCCATGCACGAGATTACCTTTTCAACAATTGACAAGCCTAAACTTCTTAGTCAGTTAACTTCAATACTTGGTGAGATTGGACTAAATATTCAAGAAGCTCATGCGTTTTCCACCTCTGATGGGTTTTCCCTGGATGTCTTCGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTCAAAGGTCTGTTGGAAAAGGAAATTTGGAAGGTTAAGGACCAATATCTGTCAAATCAGGGCACACTATATTCCTTAAATGATCAACACCAGACAAGGACGGAATCACCCCCTCATTGCATACAAATACCATCTGATGGAGCCGATGTCTGGGAAATTGATACCAGCCAGCTAAAATATGAAAACAAAGTTGGCTCTGGATCATTTGGTGACTTGTTCAGAGGCACTTATTGCAGTCAAGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAATACAGATATGCTGAAAGAGTTTGCACAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATTGGTGCATGTACTCGGCCACCAAATCTTTGTATTGTTACTGAGTTTATGTCTAGAGGAAGCTTATATGACTTTCTGCACAGACAACGGGGTGTGTTTAAACTTCCATCTTTAATAAAAGTAGCGATTGATGTTTCCAAGGGAATGAACTATCTGCATCAAAATAATATAATTCACAGAGATCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAATTGGTCAAAGTTGCTGATTTTGGAGTCGCTAGAGTGCAAACTCAGTCTGGAGTGATGACAGCTGAAACTGGAACATACCGCTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGATCAGAAGGCGGATGTTTTCAGTTTTGGAATATCACTTTGGGAACTTTTAACAGGAGAGCTGCCTTACTCTTACTTGACCCCGTTACAAGCAGCAGTTGGTGTGGTGCAGAAGGGTCTACGGCCTACAATTCCGAAACATACGCATCCAAGACTTTTTGAACTACTAGAGCGGTGCTGGCAACAAGATCCAAAGGAGAGACCAGCCTTCTCTGAAATTATTGAAATTCTTCTGCAAATAGCAAAAGAGGTCAATGATGAAAAATTAGATAGACACAAAGATAAGTCATCCCACAGTTTTCTGTCATCACTTCGGCGCGGCCATCACTGA 1731 0.4211 MVIENDIESCGSRAVQSHPNPRHHRQKLEVYNEVLRRIQDSDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLELAEDPANRPAFQVRLVQVYPFGSANHNDSSMHSNHSEKEDAQSSLNYSLKQGIHAPPTFGSSSNLEALALQTNKNNIEDGDNPMGVTPNFNRPMHEITFSTIDKPKLLSQLTSILGEIGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGLLEKEIWKVKDQYLSNQGTLYSLNDQHQTRTESPPHCIQIPSDGADVWEIDTSQLKYENKVGSGSFGDLFRGTYCSQDVAIKVLKPERINTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHRQRGVFKLPSLIKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENELVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGISLWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKHTHPRLFELLERCWQQDPKERPAFSEIIEILLQIAKEVNDEKLDRHKDKSSHSFLSSLRRGHH 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06469 576 Gene3D Transferase(Phosphotransferase) domain 1 374 572 - -
Vifa1g06469 576 SMART serkin_6 295 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06469 576 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 142 548 - -
Vifa1g06469 576 Gene3D Phosphorylase Kinase; domain 1 285 373 - -
Vifa1g06469 576 ProSitePatterns Protein kinases ATP-binding region signature. 301 322 IPR017441 GO:0005524
Vifa1g06469 576 CDD ACT_TyrKc 180 246 - -
Vifa1g06469 576 ProSiteProfiles ACT domain profile. 182 256 IPR002912 -
Vifa1g06469 576 FunFam serine/threonine-protein kinase HT1 374 566 - -
Vifa1g06469 576 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g06469 576 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Vifa1g06469 576 SUPERFAMILY ACT-like 180 245 IPR045865 -
Vifa1g06469 576 Pfam Protein tyrosine and serine/threonine kinase 295 544 IPR001245 GO:0004672|GO:0006468
Vifa1g06469 576 FunFam Serine/threonine-protein kinase isoform 1 285 373 - -
Vifa1g06469 576 SUPERFAMILY Protein kinase-like (PK-like) 272 544 IPR011009 -
Vifa1g06469 576 CDD STKc_MAP3K-like 301 544 - -
Vifa1g06469 576 ProSiteProfiles Protein kinase domain profile. 295 568 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06469 576 PRINTS Tyrosine kinase catalytic domain signature 452 462 IPR001245 GO:0004672|GO:0006468
Vifa1g06469 576 PRINTS Tyrosine kinase catalytic domain signature 471 493 IPR001245 GO:0004672|GO:0006468
Vifa1g06469 576 PRINTS Tyrosine kinase catalytic domain signature 406 424 IPR001245 GO:0004672|GO:0006468
Vifa1g06469 576 PRINTS Tyrosine kinase catalytic domain signature 515 537 IPR001245 GO:0004672|GO:0006468
Vifa1g06469 576 PRINTS Tyrosine kinase catalytic domain signature 369 382 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06469 Vifa-Chr1 1004012088 1004021026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06469 8 575 MAP Kinase Kinase Kinase AT4G35780 70.280 0.0 809
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06469 PK_Tyr_Ser-Thr 1e-74 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06469 - - gmx:100816767 1000.73