Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06468 ATGGTGATCGAGAACGACATTGAGAGTTGCGGAAGTAGAGCGGTGCAGTCGCATCCGAATCCTCGTCACCACCGTCAGAAGCTTGAGGTTTACAATGAGGTGCTTCGTCGAATTCAGGATTCCGATTGTGAAGAAGCTCATGTTCCTGGTTTCGATGATCAGCTATGGCTTCACTTCAATCGTCTTCCTGCTAGGTATGCATTGGATGTGAATGTGGAGAGAGCAGAAGATGTTCTTGCTCATAAAAGATTGCTCGAGTTGGCAGAAGATCCTGCTAATCGTCCCGCGTTTCAAGTTCGTTTAGTACAGGTATATCCTTTTGGTAGTGCAAATCATAATGATTCTTCCATGCATTCAAATCATTCTGAGAAAGAAGATGCACAGAGTTCCCTTAACTATTCTTTAAAGCAGGGAATTCATGCACCACCTACGTTTGGTTCTTCCTCTAACCTTGAAGCTCTTGCCCTTCAAACAAATAAAAATAACATTGAAGATGGAGACAATCCTATGGGTGTGACGCCAAACTTTAACCGGCCCATGCACGAGATTACCTTTTCAACAATTGACAAGCCTAAACTTCTTAGTCAGTTAACTTCAATACTTGGTGAGATTGGACTAAATATTCAAGAAGCTCATGCGTTTTCCACCTCTGATGGGTTTTCCCTGGATGTCTTCGTTGTTGAGGGATGGCCTAATGAGGAAACTGAGGAGCTCAAAGGTCTGTTGGAAAAGGAAATTTGGAAGGTTAAGGGCACACTATATTCCTTAAATGATCAACACCAGACAAGGACGGAATCACCCCCTCATTGCATACAAATACCATCTGATGGAGCCGATGTCTGGGAAATTGATACCAGCCAGCTAAAATATGAAAACAAAGTTGGCTCTGGATCATTTGGTGACTTGTTCAGAGGCACTTATTGCAGTCAAGATGTGGCTATCAAAGTTCTTAAGCCTGAACGCATAAATACAGATATGCTGAAAGAGTTTGCACAGGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTTGTTCAGTTCATTGGTGCATGTACTCGGCCACCAAATCTTTGTATTGTTACTGAGTTTATGTCTAGAGGAAGCTTATATGACTTTCTGCACAGACAACGGGGTGTGTTTAAACTTCCATCTTTAATAAAAGTAGCGATTGATGTTTCCAAGGGAATGAACTATCTGCATCAAAATAATATAATTCACAGAGATCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAATTGGTCAAAGTTGCTGATTTTGGAGTCGCTAGAGTGCAAACTCAGTCTGGAGTGATGACAGCTGAAACTGGAACATACCGCTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGATCAGAAGGCGGATGTTTTCAGTTTTGGAATATCACTTTGGGAACTTTTAACAGGAGAGCTGCCTTACTCTTACTTGACCCCGTTACAAGCAGCAGTTGGTGTGGTGCAGAAGGGTCTACGGCCTACAATTCCGAAACATACGCATCCAAGACTTTTTGAACTACTAGAGCGGTGCTGGCAACAAGATCCAAAGGAGAGACCAGCCTTCTCTGAAATTATTGAAATTCTTCTGCAAATAGCAAAAGAGGTCAATGATGAAAAATTAGATAGACACAAAGATAAGTCATCCCACAGTTTTCTGTCATCACTTCGGCGCGGCCATCACTGA 1710 0.4216 MVIENDIESCGSRAVQSHPNPRHHRQKLEVYNEVLRRIQDSDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKRLLELAEDPANRPAFQVRLVQVYPFGSANHNDSSMHSNHSEKEDAQSSLNYSLKQGIHAPPTFGSSSNLEALALQTNKNNIEDGDNPMGVTPNFNRPMHEITFSTIDKPKLLSQLTSILGEIGLNIQEAHAFSTSDGFSLDVFVVEGWPNEETEELKGLLEKEIWKVKGTLYSLNDQHQTRTESPPHCIQIPSDGADVWEIDTSQLKYENKVGSGSFGDLFRGTYCSQDVAIKVLKPERINTDMLKEFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSRGSLYDFLHRQRGVFKLPSLIKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENELVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGISLWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKHTHPRLFELLERCWQQDPKERPAFSEIIEILLQIAKEVNDEKLDRHKDKSSHSFLSSLRRGHH 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06468 569 Pfam Protein tyrosine and serine/threonine kinase 288 537 IPR001245 GO:0004672|GO:0006468
Vifa1g06468 569 SMART serkin_6 288 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06468 569 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Vifa1g06468 569 SUPERFAMILY ACT-like 180 245 IPR045865 -
Vifa1g06468 569 Gene3D Phosphorylase Kinase; domain 1 278 366 - -
Vifa1g06468 569 FunFam Serine/threonine-protein kinase isoform 1 278 366 - -
Vifa1g06468 569 CDD ACT_TyrKc 180 246 - -
Vifa1g06468 569 ProSitePatterns Protein kinases ATP-binding region signature. 294 315 IPR017441 GO:0005524
Vifa1g06468 569 ProSiteProfiles ACT domain profile. 182 257 IPR002912 -
Vifa1g06468 569 FunFam serine/threonine-protein kinase HT1 367 559 - -
Vifa1g06468 569 SUPERFAMILY Protein kinase-like (PK-like) 266 537 IPR011009 -
Vifa1g06468 569 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 130 541 - -
Vifa1g06468 569 MobiDBLite consensus disorder prediction 1 24 - -
Vifa1g06468 569 CDD STKc_MAP3K-like 294 537 - -
Vifa1g06468 569 PRINTS Tyrosine kinase catalytic domain signature 508 530 IPR001245 GO:0004672|GO:0006468
Vifa1g06468 569 PRINTS Tyrosine kinase catalytic domain signature 445 455 IPR001245 GO:0004672|GO:0006468
Vifa1g06468 569 PRINTS Tyrosine kinase catalytic domain signature 464 486 IPR001245 GO:0004672|GO:0006468
Vifa1g06468 569 PRINTS Tyrosine kinase catalytic domain signature 362 375 IPR001245 GO:0004672|GO:0006468
Vifa1g06468 569 PRINTS Tyrosine kinase catalytic domain signature 399 417 IPR001245 GO:0004672|GO:0006468
Vifa1g06468 569 Gene3D Transferase(Phosphotransferase) domain 1 367 565 - -
Vifa1g06468 569 ProSiteProfiles Protein kinase domain profile. 288 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06468 Vifa-Chr1 1004012088 1004021026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06468 8 568 MAP Kinase Kinase Kinase AT4G35780 69.877 0.0 798
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vifa1g06468 PK_Tyr_Ser-Thr 9.8e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06468 - - gmx:100816767 984.556