Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06452 ATGTCTCGGTTGAGTTCCGAAAAGAAACTCGGTGCAGGTCGCATTGTTGCTGTTGCTATTGAGAATAATAAAACTAGCCAACATGCTGCTAAATGGGCTGTGGAAAATCTTCTGCCTAAAGATCAATGCCTCTATCTCATTCATGTTAAAGCAAAAATTAATTCTTCCACTTCCATCTCATCATCGTCATCTGGAGGCTATGCATGTAATGGCGATGTAAATGAAGATGCCTTTGATAGCGAATCAAAAGATCTTTTTGATTCCTTTCGTGTTTTCTGCAATAGAAAAAGCATACAATGCAGAGAAGTGTTGTTGGAGGATACGGATATATCGAAGGCGTTAATAGATTGCATTTCGACTCATTGTATTGAGCTTCTTGTATTAGGAGCAGCATCAAGGGGTGGTATCGTTAGAAGATTTAGGACAACGGATGTTCCAACCACTGTTTCGAAAGCGGCACCACCATTCTGCACTGTATATATAATTTCTAAAGGAAAGATTTCTACAGTTAGATCTGCAACAGCTTCAATTCCTAAACCAGCCGTGATGCCTATGATTGCGCCACCAACACCGTCACGTAATCAGCAGTTTCAACAGCAATATGCAATGGCGGGTCGAAGTCCGGAAAGATCGGAGCCTCATTTGACAAGAAACTACCCACCGCGACCTATATCAGATAGGCATTCAGCATTCGGGATGCGGCAGGGGCTGGATGATGAACAAGAAATGATATCACCGTTCAATAGGAGAGGACACAAAGCATACGAGTCCTCGTGTCCTGATTCAGATATATCATTTGTGAGCAGTGGAAGACCAAGTATTGATCGAATATTCCCTTCGATGTATAACATGGACGATCTAGACACTAGTATTAGTAGTGGAATTCCCACCGGGAGGCTTTCAGATTTTGATGCAAGAAGCAGCTTCGCTTCATCCTATTCTGGAGGAGGAGGAGGACCGAAGTCAATTGACATGTCATCTCATTTGGATGATTATTCATTCAGCTCTCATAGCAGTGGTGGTGGTCTTTCTTCATCAAGGTTATCTGATGGTGGAGATGAAGTCGAAGCAGAGATGAGAAGGCTTAAGCTTGAACTCAAACAAACTATGGAAATGTACAGTTCAGCTTGTAAGGAAGCACTCACAGCCAAGCAGAAGGCAATAGAACTACAACGTTGGAGATCCGAAGAAGAAAAGAAGTTGGAGGAGGCAAGAGAAGGTGAAGGAGCAGCTATGGCTATGGTAGAGTTGGAGCAAGAAAAGTGTAAAGCTGCGCTCAAGGCAGCGGAAGCATCTCAGAGAATCGCAACATTGGAAGTACAAAAGCGAATAAACGTAGAAAGGAAAAGCGAAATAGAAGCAACTCAGAGGAGAAAATCGGACGATTCTTATAATCCAATGCATAGCACTGCTAGATATAGAAAATACAGTATTGAGGAAATTGAAGCTGCAACAGAAAGGTTTTCAGACAGTCTCAAAATCGGTGAAGGAGGGTATGGTCCTGTTTTCAGATGTGAACTTGATCATACGCAGGTTGCTATCAAAGTGTTGAAATCAGATGCAGCTCAAGGAAGGCAACAATTTAACCAGGAAGTTGAAGTTTTGAGTTGTATAAGACATCCAAATATGGTGCTTCTTTTAGGAGCATGTCCTGAATTTGGTTGTATAGTGTATGAGTACATGGCTAATGGAAGTTTGGATGATTGTTTGTTCAGGAGAGGAAAGTCACCTCCTCTTCCTTGGCAGTTGAGATTCCAAATTGCTGCTGAGATAGCCACCGGACTCCTTTTCCTTCACCAGACTAAACCAGAACCGATTGTGCACCGTGACTTGAAACCTGGAAACATTTTGCTTGACCGAAACTATGTGAGCAAGATTGGTGACGTTGGTTTGGCAAGGCTCGTTCCTCCTTCTGTTCAAGACACTGTAACTCAGTATCGCATGACTTCGACTGCTGGAACTTTTTGTTACATTGACCCTGAGTACCAGCAAACCGGCATGCTTGGTATCAAATCTGATATTTACTCACTTGGAATCATGCTTTTACAAATGATTACCGCCAAGCCTCCAATGGGTTTGACTCATCATGTTGGTAGATCTATTGAAAAGGGAACTTTTCCTGACATGCTCGATCCTGCTGTTCAGGATTGGCCTATTGAACACGCCTTACATTTCGCCAAACTTTCCCTTCAGTGTGCAGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTCGTGCTTCCTGAGCTCAACAAACTCAGAATGTTCGCCGATGAAAACATGCCTATGATGATGTTTAGAGGCGGTAGTGCAGCATTCAATCACAGAAGTGCCAACTATTTCATGAATTCCCCAGTTTCTACAAATCAAGACATTATGAGTGAATCAGATTCTTTGTCTGGAATATCGGGATACGGAAGCCGTTCTAGCACATCATCATTGGGGAGACTGTAA 2457 0.4265 MSRLSSEKKLGAGRIVAVAIENNKTSQHAAKWAVENLLPKDQCLYLIHVKAKINSSTSISSSSSGGYACNGDVNEDAFDSESKDLFDSFRVFCNRKSIQCREVLLEDTDISKALIDCISTHCIELLVLGAASRGGIVRRFRTTDVPTTVSKAAPPFCTVYIISKGKISTVRSATASIPKPAVMPMIAPPTPSRNQQFQQQYAMAGRSPERSEPHLTRNYPPRPISDRHSAFGMRQGLDDEQEMISPFNRRGHKAYESSCPDSDISFVSSGRPSIDRIFPSMYNMDDLDTSISSGIPTGRLSDFDARSSFASSYSGGGGGPKSIDMSSHLDDYSFSSHSSGGGLSSSRLSDGGDEVEAEMRRLKLELKQTMEMYSSACKEALTAKQKAIELQRWRSEEEKKLEEAREGEGAAMAMVELEQEKCKAALKAAEASQRIATLEVQKRINVERKSEIEATQRRKSDDSYNPMHSTARYRKYSIEEIEAATERFSDSLKIGEGGYGPVFRCELDHTQVAIKVLKSDAAQGRQQFNQEVEVLSCIRHPNMVLLLGACPEFGCIVYEYMANGSLDDCLFRRGKSPPLPWQLRFQIAAEIATGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKIGDVGLARLVPPSVQDTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQMITAKPPMGLTHHVGRSIEKGTFPDMLDPAVQDWPIEHALHFAKLSLQCAEMRRKDRPDLGKVVLPELNKLRMFADENMPMMMFRGGSAAFNHRSANYFMNSPVSTNQDIMSESDSLSGISGYGSRSSTSSLGRL 818
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06452 818 Gene3D Transferase(Phosphotransferase) domain 1 561 765 - -
Vifa1g06452 818 MobiDBLite consensus disorder prediction 202 229 - -
Vifa1g06452 818 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 463 560 - -
Vifa1g06452 818 Gene3D HUPs 14 162 IPR014729 -
Vifa1g06452 818 Coils Coil 352 372 - -
Vifa1g06452 818 SUPERFAMILY Protein kinase-like (PK-like) 462 747 IPR011009 -
Vifa1g06452 818 CDD STK_N 15 165 - -
Vifa1g06452 818 MobiDBLite consensus disorder prediction 334 354 - -
Vifa1g06452 818 FunFam U-box domain-containing protein 51 561 761 - -
Vifa1g06452 818 SMART serkin_6 488 757 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06452 818 PANTHER OS02G0152300 PROTEIN 16 773 - -
Vifa1g06452 818 MobiDBLite consensus disorder prediction 793 818 - -
Vifa1g06452 818 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 149 - -
Vifa1g06452 818 Pfam Protein kinase domain 491 741 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06452 818 ProSiteProfiles Protein kinase domain profile. 488 751 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06452 818 ProSitePatterns Serine/Threonine protein kinases active-site signature. 606 618 IPR008271 GO:0004672|GO:0006468
Vifa1g06452 818 Gene3D Phosphorylase Kinase; domain 1 467 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06452 Vifa-Chr1 1003066908 1003069936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06452 6 791 Receptor kinase-like Gene Family AT1G78940 52.000 0.0 738
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa1g06452 Pkinase 9.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06452 - - gmx:100803837 981.859