Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06451 ATGTCTCGGTTGAGTTCCGAAAAGAAACTCGGTGCAGGTCGCATTGTTGCTGTTGCTATTGAGAATAATAAAACTAGCCAACATGCTGCTAAATGGGCTGTGGAAAATCTTCTGCCTAAAGATCAATGCCTCTATCTCATTCATGTTAAAGCAAAAATTAATTCTTCCACTTCCATCTCATCATCGTCATCTGGAGGCTATGCATGTAATGGCGATGTAAATGAAGATGCCTTTGATAGCGAATCAAAAGATCTTTTTGATTCCTTTCGTGTTTTCTGCAATAGAAAAAGCATACAATGCAGAGAAGTGTTGTTGGAGGATACGGATATATCGAAGGCGTTAATAGATTGCATTTCGACTCATTGTATTGAGCTTCTTGTATTAGGAGCAGCATCAAGGGGTGGTATCGTTAGATTTAGGACAACGGATGTTCCAACCACTGTTTCGAAAGCGGCACCACCATTCTGCACTGTATATATAATTTCTAAAGGAAAGATTTCTACAGTTAGATCTGCAACAGCTTCAATTCCTAAACCAGCCGTGATGCCTATGATTGCGCCACCAACACCGTCACGTAATCAGCAGTTTCAACAGCAATATGCAATGGCGGGTCGAAGTCCGGAAAGATCGGAGCCTCATTTGACAAGAAACTACCCACCGCGACCTATATCAGATAGGCATTCAGCATTCGGGATGCGGCAGGGGCTGGATGATGAACAAGAAATGATATCACCGTTCAATAGGAGAGGACACAAAGCATACGAGTCCTCGTGTCCTGATTCAGATATATCATTTGTGAGCAGTGGAAGACCAAGTATTGATCGAATATTCCCTTCGATGTATAACATGGACGATCTAGACACTAGTATTAGTAGTGGAATTCCCACCGGGAGGCTTTCAGATTTTGATGCAAGAAGCAGCTTCGCTTCATCCTATTCTGGAGGAGGAGGAGGACCGAAGTCAATTGACATGTCATCTCATTTGGATGATTATTCATTCAGCTCTCATAGCAGTGGTGGTGGTCTTTCTTCATCAAGGTTATCTGATGGTGGAGATGAAGTCGAAGCAGAGATGAGAAGGCTTAAGCTTGAACTCAAACAAACTATGGAAATGTACAGTTCAGCTTGTAAGGAAGCACTCACAGCCAAGCAGAAGGCAATAGAACTACAACGTTGGAGATCCGAAGAAGAAAAGAAGTTGGAGGAGGCAAGAGAAGGTGAAGGAGCAGCTATGGCTATGGTAGAGTTGGAGCAAGAAAAGTGTAAAGCTGCGCTCAAGGCAGCGGAAGCATCTCAGAGAATCGCAACATTGGAAGTACAAAAGCGAATAAACGTAGAAAGGAAAAGCGAAATAGAAGCAACTCAGAGGAGAAAATCGGACGATTCTTATAATCCAATGCATAGCACTGCTAGATATAGAAAATACAGTATTGAGGAAATTGAAGCTGCAACAGAAAGGTTTTCAGACAGTCTCAAAATCGGTGAAGGAGGGTATGGTCCTGTTTTCAGATGTGAACTTGATCATACGCAGGTTGCTATCAAAGTGTTGAAATCAGATGCAGCTCAAGGAAGGCAACAATTTAACCAGGAAGTTGAAGTTTTGAGTTGTATAAGACATCCAAATATGGTGCTTCTTTTAGGAGCATGTCCTGAATTTGGTTGTATAGTGTATGAGTACATGGCTAATGGAAGTTTGGATGATTGTTTGTTCAGGAGAGGAAAGTCACCTCCTCTTCCTTGGCAGTTGAGATTCCAAATTGCTGCTGAGATAGCCACCGGACTCCTTTTCCTTCACCAGACTAAACCAGAACCGATTGTGCACCGTGACTTGAAACCTGGAAACATTTTGCTTGACCGAAACTATGTGAGCAAGATTGGTGACGTTGGTTTGGCAAGGCTCGTTCCTCCTTCTGTTCAAGACACTGTAACTCAGTATCGCATGACTTCGACTGCTGGAACTTTTTGTTACATTGACCCTGAGTACCAGCAAACCGGCATGCTTGGTATCAAATCTGATATTTACTCACTTGGAATCATGCTTTTACAAATGATTACCGCCAAGCCTCCAATGGGTTTGACTCATCATGTTGGTAGATCTATTGAAAAGGGAACTTTTCCTGACATGCTCGATCCTGCTGTTCAGGATTGGCCTATTGAACACGCCTTACATTTCGCCAAACTTTCCCTTCAGTGTGCAGAAATGAGGAGAAAAGATAGACCTGATCTTGGAAAAGTCGTGCTTCCTGAGCTCAACAAACTCAGAATGTTCGCCGATGAAAACATGCCTATGATGATGTTTAGAGGCGGTAGTGCAGCATTCAATCACAGAAGTGCCAACTATTTCATGAATTCCCCAGTTTCTACAAATCAAGACATTATGAGTGAATCAGATTCTTTGTCTGGAATATCGGGATACGGAAGCCGTTCTAGCACATCATCATTGGGGAGACTGTAA 2454 0.4267 MSRLSSEKKLGAGRIVAVAIENNKTSQHAAKWAVENLLPKDQCLYLIHVKAKINSSTSISSSSSGGYACNGDVNEDAFDSESKDLFDSFRVFCNRKSIQCREVLLEDTDISKALIDCISTHCIELLVLGAASRGGIVRFRTTDVPTTVSKAAPPFCTVYIISKGKISTVRSATASIPKPAVMPMIAPPTPSRNQQFQQQYAMAGRSPERSEPHLTRNYPPRPISDRHSAFGMRQGLDDEQEMISPFNRRGHKAYESSCPDSDISFVSSGRPSIDRIFPSMYNMDDLDTSISSGIPTGRLSDFDARSSFASSYSGGGGGPKSIDMSSHLDDYSFSSHSSGGGLSSSRLSDGGDEVEAEMRRLKLELKQTMEMYSSACKEALTAKQKAIELQRWRSEEEKKLEEAREGEGAAMAMVELEQEKCKAALKAAEASQRIATLEVQKRINVERKSEIEATQRRKSDDSYNPMHSTARYRKYSIEEIEAATERFSDSLKIGEGGYGPVFRCELDHTQVAIKVLKSDAAQGRQQFNQEVEVLSCIRHPNMVLLLGACPEFGCIVYEYMANGSLDDCLFRRGKSPPLPWQLRFQIAAEIATGLLFLHQTKPEPIVHRDLKPGNILLDRNYVSKIGDVGLARLVPPSVQDTVTQYRMTSTAGTFCYIDPEYQQTGMLGIKSDIYSLGIMLLQMITAKPPMGLTHHVGRSIEKGTFPDMLDPAVQDWPIEHALHFAKLSLQCAEMRRKDRPDLGKVVLPELNKLRMFADENMPMMMFRGGSAAFNHRSANYFMNSPVSTNQDIMSESDSLSGISGYGSRSSTSSLGRL 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06451 817 MobiDBLite consensus disorder prediction 333 353 - -
Vifa1g06451 817 CDD STK_N 15 164 - -
Vifa1g06451 817 FunFam U-box domain-containing protein 51 560 760 - -
Vifa1g06451 817 Pfam Protein kinase domain 490 740 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06451 817 SUPERFAMILY Protein kinase-like (PK-like) 461 746 IPR011009 -
Vifa1g06451 817 Gene3D HUPs 14 161 IPR014729 -
Vifa1g06451 817 Gene3D Phosphorylase Kinase; domain 1 466 559 - -
Vifa1g06451 817 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 16 161 - -
Vifa1g06451 817 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 462 559 - -
Vifa1g06451 817 Coils Coil 351 371 - -
Vifa1g06451 817 ProSitePatterns Serine/Threonine protein kinases active-site signature. 605 617 IPR008271 GO:0004672|GO:0006468
Vifa1g06451 817 ProSiteProfiles Protein kinase domain profile. 487 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06451 817 PANTHER OS02G0152300 PROTEIN 16 772 - -
Vifa1g06451 817 SMART serkin_6 487 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06451 817 MobiDBLite consensus disorder prediction 200 228 - -
Vifa1g06451 817 MobiDBLite consensus disorder prediction 792 817 - -
Vifa1g06451 817 Gene3D Transferase(Phosphotransferase) domain 1 560 764 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06451 Vifa-Chr1 1003066908 1003069936 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06451 6 790 Receptor kinase-like Gene Family AT1G78940 51.815 0.0 734
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vifa1g06451 Pkinase 9.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06451 - - gmx:100803837 975.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03760 6 1239720087 1239723397 Vifa1g06451 1 1003066908 1003069936 PCT