Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06448 ATGGCACGAAAACTCTTCATCACTTCTTTAACCATCTTCTTTTCTATTCTCATCGAAATCTCCTCATCGATTTCAGATATAGATTCTCTCCTCAAATTGAAAACCTCTTTACAAAACACCGATACCGCGTTATCTTCATGGAACACATCCGTCCCTCCCTGTGATGGTGATAACGCTAATTGGTCCGGCGTTCTTTGCTATAAAGGACATATTTGGGGATTCAAACTCGAAAACATGAACCTTAAAGGCACCATCGACGTCAATGTAATCAAGGATTTACCTTATATCAGAACCATCAGTTTCATGCACAACCAATTTGATTCACCCTGGCCCAACCTCCACAAACTCTCTGGTCTCAAGACCATTTATCTCTCTGATAATAAATTCTCTGGTGAGATTCCAGATGACACGTTTAAGAGCATGCAATGGTTGAAGAAAATTCATCTCTCTAACAATCAGTTCACTGGTCCTATTCCATCTTCCCTTGCTTCGCTGCCGAGGCTCATATCCTTGAAGTTGGATGGAAATAAATTCACTGGTCCTATTCCTCAATTTCAACGCACTCTTAAATCATTCAGTGTAGCAAATAATCAGTTAGAGGGTCAAATACCTGCCACCCTTAGCAAGATTCCAGCTTCATCTTTTTCTGGTAATGAAAAGCTGTGTGGAGCCCCTTTAGGACCATGTTCATCTCAAAAGAAATCACCATCATCACCATCATCATCATCATCATCACCATCATCATCATCATCATCACCATCATCATCATCATCATCATCATCATCCATAAATGTGAACAGTATTGTGGTTGTGGTTCTTGTTAGTCTTGCATTGCTTGTGATTGCAGCAGTAATATTATTTTTCCTTATTAGAAGAAGGAAAAAAACTGAACAAGGAGCAATAGTAGATGGAGGAGGAGTTGCTTTAATTGGCAACACCAGCAACATCACTGTGGATAGTGGTATTACTCAAAAGAGAGGACCATCATCCTCAAATAATAATAATAATTCAGATGATCAGGGAGATTCAACACGATCACGCTTAAGCAGCAACAGCAGTAGCAGAAGAGAAGAAATGAAGCTATCTTTTGTTAGGGAAGAAGCATCAGAACAATTTGATTTACAAGATCTTTTGAGAGCCTCTGCTGAGATATTAGGAAGTGGTTGTCACAGTTCATCTTACAAGGCTGGTTTGTTGACTGGCTCTACCGTTGTTGTCAAAAGATTCAAACAGATGAACAATTTTGGTAGGGAAGAGTTTAAAGAACACATGAGAAGATTAGGAAGGTTGAATCATCCTAATCTCATTTCTCTCTTAGCTTACTACTACAAAAGAGATGAAAAACTCTTCGTTACCGACTTCATTCACAATGGCAGCTTAGCCGTCCGTCTTCACGGATACCAAGCTATAGGACAAGTAAGCCTTGATTGGCCGAAAAGGTTGGCGATAGTGAAAGGTGTAGCACAAGGTATTGAATATCTGTACAAAGAAATGCCGAACTTGATTGCGCCTCACGGTCATCTTAAATCTTCAAATGTTCTATTGAGTGATTCTATGGAGCCTATATTAACTGACTATGGATTAATACCTGTGATAAACCAAGATATTGCTCATGAAATAATGGTTGCATACAAGTCACCAGAGTATTTGCAGCATGGGAGGATCACTAAGAAGACTGATGTGTGGAGTCTTGGTTTACTCACTTTGGAAATTCTAACTGGAAAGTTCCCTGCTAATTTTATACAACAAAGCGAGGTGAGTTTGGCGAATTGGGTTGATTCGGTTGTGCAAGAAGAGTGGACTAGTCAAGTGTTTGATAAAGATATGGAGTTTAGTAGAAATAGTGAGGGAGAGATATTTAAGCTTTTGAAGATTGCATTGGCTTGTTGTGAAATGGATGTTGATAAGAGATTGGATTTAAATGAAGCTGTTGATAGAATTCAAGAAGTACAAATACAAGAAGATAATAATGAGGAGGATCTGTAG 1986 0.3892 MARKLFITSLTIFFSILIEISSSISDIDSLLKLKTSLQNTDTALSSWNTSVPPCDGDNANWSGVLCYKGHIWGFKLENMNLKGTIDVNVIKDLPYIRTISFMHNQFDSPWPNLHKLSGLKTIYLSDNKFSGEIPDDTFKSMQWLKKIHLSNNQFTGPIPSSLASLPRLISLKLDGNKFTGPIPQFQRTLKSFSVANNQLEGQIPATLSKIPASSFSGNEKLCGAPLGPCSSQKKSPSSPSSSSSSPSSSSSSPSSSSSSSSSINVNSIVVVVLVSLALLVIAAVILFFLIRRRKKTEQGAIVDGGGVALIGNTSNITVDSGITQKRGPSSSNNNNNSDDQGDSTRSRLSSNSSSRREEMKLSFVREEASEQFDLQDLLRASAEILGSGCHSSSYKAGLLTGSTVVVKRFKQMNNFGREEFKEHMRRLGRLNHPNLISLLAYYYKRDEKLFVTDFIHNGSLAVRLHGYQAIGQVSLDWPKRLAIVKGVAQGIEYLYKEMPNLIAPHGHLKSSNVLLSDSMEPILTDYGLIPVINQDIAHEIMVAYKSPEYLQHGRITKKTDVWSLGLLTLEILTGKFPANFIQQSEVSLANWVDSVVQEEWTSQVFDKDMEFSRNSEGEIFKLLKIALACCEMDVDKRLDLNEAVDRIQEVQIQEDNNEEDL 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06448 661 ProSiteProfiles Protein kinase domain profile. 379 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06448 661 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Vifa1g06448 661 MobiDBLite consensus disorder prediction 318 360 - -
Vifa1g06448 661 MobiDBLite consensus disorder prediction 318 350 - -
Vifa1g06448 661 Gene3D Ribonuclease Inhibitor 24 186 IPR032675 -
Vifa1g06448 661 Gene3D Transferase(Phosphotransferase) domain 1 455 660 - -
Vifa1g06448 661 SUPERFAMILY Protein kinase-like (PK-like) 383 652 IPR011009 -
Vifa1g06448 661 MobiDBLite consensus disorder prediction 226 261 - -
Vifa1g06448 661 SUPERFAMILY L domain-like 26 227 - -
Vifa1g06448 661 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 87 182 - -
Vifa1g06448 661 Pfam Protein kinase domain 382 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06448 661 Coils Coil 640 660 - -
Vifa1g06448 661 MobiDBLite consensus disorder prediction 230 261 - -
Vifa1g06448 661 FunFam pollen receptor-like kinase 1 347 454 - -
Vifa1g06448 661 Gene3D Phosphorylase Kinase; domain 1 343 454 - -
Vifa1g06448 661 Gene3D Ribonuclease Inhibitor 188 230 IPR032675 -
Vifa1g06448 661 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Vifa1g06448 661 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 14 652 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06448 Vifa-Chr1 1002630325 1002632543 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06448 7 659 Receptor kinase-like Gene Family AT5G35390 48.554 0.0 625
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vifa1g06448 Pkinase 3.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06448 - - gmx:100785189 734.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa6g03758 6 1238960985 1238963328 Vifa1g06448 1 1002630325 1002632543 PCT