Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06396 ATGGCAGACGCTGAGGATATCCAACCTCTTGTTTGTGACAATGGAACAGGAATGGTCAAGGCAGGTTTTGCTGGAGATGATGCCCCACGCGCTGTGTTTCCGAGCATTGTAGGTCGTCCACGTCATACCGGTGTTATGGTTGGCATGGGCCAAAAAGATGCATATGTTGGTGATGAGGCACAGTCTAAACGTGGTATCCTCACACTCAAGTACCCAATTGAGCATGGTATTGTTAGCAATTGGGATGATATGGAAAAGATTTGGCATCATACCTTTTATAATGAGCTTCGTGTTGCACCCGAAGAACATCCAGTTCTCTTAACAGAAGCTCCTCTTAATCCCAAGGCTAATCGTGAGAAGATGACTCAAATCATGTTTGAGACTTTTAATGCTCCGGCTATGTATGTGGCCATTCAGGCTGTTCTTTCACTTTATGCCAGTGGTCGAACAACCGGTATTGTGTTGGATTCTGGTGATGGTGTCAGCCACACTGTCCCTATTTATGAGGGTTACGCCCTCCCACACGCCATCCTCCGTCTTGATTTGGCCGGCCGTGACCTCACTGATTTCTTGATGAAAATTCTGACAGAGCGTGGCTATTCTTTTACCACATCAGCAGAGCGTGAAATTGTGAGGGATATGAAGGAAAAACTGGCTTACATTGCTCTTGATTATGAGCAAGAGCTAGAGACATCCAAGACCAGCTCTGCAGTGGAGAAGAGCTATGAATTGCCTGATGGTCAGGTGATCACTATTGGTGCTGAGCGTTTTAGGTGTCCAGAGGTTTTGTACCAACCATCCATGGTGGGAATGGAAGCTGCAGGAATTCATGAGACCACATACAATTCCATAATGAAATGTGATGTTGACATCAGGAAAGACCTGTATGGTAACATTGTCCTTTCAGGAGGTACAACCATGTTCCCTGGCATTGCTGATAGAATGAGCAAGGAAATTTCTGCACTTGCACCTAGTAGCATGAAGATCAAGGTGGTAGCACCACCTGAGAGAAAGTACAGTGTCTGGATTGGTGGTTCTATCTTGGCTTCTCTCAGCACTTTCCAACAGATGTGGATTGCAAAGGCTGAGTATGATGAGTCTGGACCATCAATTGTGCATAGGAAGTGTTTCTAA 1134 0.4559 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDFLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLYQPSMVGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06396 377 FunFam Actin, alpha skeletal muscle 3 164 - -
Vifa1g06396 377 Pfam Actin 5 377 IPR004000 -
Vifa1g06396 377 PRINTS Actin signature 51 62 IPR004000 -
Vifa1g06396 377 PRINTS Actin signature 238 254 IPR004000 -
Vifa1g06396 377 PRINTS Actin signature 63 85 IPR004000 -
Vifa1g06396 377 PRINTS Actin signature 142 161 IPR004000 -
Vifa1g06396 377 PRINTS Actin signature 28 37 IPR004000 -
Vifa1g06396 377 PRINTS Actin signature 117 130 IPR004000 -
Vifa1g06396 377 FunFam Actin, alpha skeletal muscle 331 377 - -
Vifa1g06396 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Vifa1g06396 377 Gene3D - 10 371 - -
Vifa1g06396 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Vifa1g06396 377 Gene3D - 140 340 - -
Vifa1g06396 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Vifa1g06396 377 FunFam Actin, alpha skeletal muscle 36 73 - -
Vifa1g06396 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Vifa1g06396 377 FunFam Actin, muscle 182 273 - -
Vifa1g06396 377 SMART actin_3 7 377 IPR004000 -
Vifa1g06396 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Vifa1g06396 377 PANTHER ACTIN 9 370 IPR004000 -
Vifa1g06396 377 FunFam Actin, alpha skeletal muscle 257 330 - -
Vifa1g06396 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Vifa1g06396 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06396 Vifa-Chr1 996435244 996436775 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06396 1 377 Cytoskeleton Gene Families AT3G12110 96.817 0.0 766
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06396 K10355 - gmx:100798523 755.362