Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06386 ATGAAGGATTCTGAGAAATGTTCCAACTCAAACGGTATTGAATCCGCTGTTTTTCAAGGGTTAGAAGCTAGAAAAGTTGGGCAAAATAGAAGAGCTTTGGGTGTGATTAATCAGAATATGATACCTAACAAGAGGGCTGTATCAGAAAGAAATGAAGTTTGTGAAAAGAAACAAGTGGATCCGGTTCATCGACCCATCACTCGGAGGTTTGCGGCTAAAATTGCTAGCACACAGAAACTTAAGGCTGAGGGGACTAACAAAAGGTCGAACTTGACGAATTCAAATGGATTTGGAGATTGTATATTTGTTGATGATGAACATAAGCTGGTGGAAGACCAACCAGTGCCAATGGCTTTAGAGAAAACTGAACCAACCCGAAACGAATCAGACCAGATGGATGAAATTGAGATGGAGGATATGATGGAAGAGCCTGTTTTGGACATTGACATCTCTGATGCAAATGACCCTCTTGCAGTTGCTGAATATGTTGATGATCTTTATGCTTACTACAGAAAAGTTGAGAGTACTGGCTGTGCCTCACCAAATTATATGGCTGAGCAATTTGACATTAATGAAAGAATGAGGGCCATACTGATTGATTGGCTTATTGAGGTGCACGACAAATTTGACCTGGTGCACGAGACATTGTTTCTCACAGTTAATCTTATAGACAGATTTTTGGAAAAGCAGTCCATGGTAAGAAAGAAGCTTCAGTTAGTTGGTCTAGTGGCAATGCTTTTGGCATGCAAGTATGAGGAAGTTTCAGTGCCTGTGGTTGGAGATCTAATTCTTATATCAGACCGAGCATACAGTCGGAATGAAGTTCTTGAAATGGAGAAGTTGATGGTCAACACATTGAAGTTTAACATATCTGTGCCAACTGCATACGTTTTCATTAGAAGGTTCCTAAAGGCAGCTCAAGCAGACAGAAAACTTGAGCTGCTAGCTTTCTTTTTGGTAGAGCTATCTCTAGTAGAATATGCAATGTTGAAGTTCCCTCCTTCTCAGCTAGCTGCAGCTGCTGTCTATACCGCTCAGTGTGCTACCTATGGTTTCAAACAGTGGAGTAAGACATGTGAATGGCACACCAACTACTCAGAAGATCAACTATTAGAGTGCTCCAGTTTAATGGTTGATTTTCACAAGAAGGCTGGGACAGGGAAACTTACAGGGGCACATCGGAAGTATTGCACATCAAAATTCATCTTTACTGCAAAACGTGAACCAGCAAGTTTTCTTCTAGAGAACTAG 1251 0.4101 MKDSEKCSNSNGIESAVFQGLEARKVGQNRRALGVINQNMIPNKRAVSERNEVCEKKQVDPVHRPITRRFAAKIASTQKLKAEGTNKRSNLTNSNGFGDCIFVDDEHKLVEDQPVPMALEKTEPTRNESDQMDEIEMEDMMEEPVLDIDISDANDPLAVAEYVDDLYAYYRKVESTGCASPNYMAEQFDINERMRAILIDWLIEVHDKFDLVHETLFLTVNLIDRFLEKQSMVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDRAYSRNEVLEMEKLMVNTLKFNISVPTAYVFIRRFLKAAQADRKLELLAFFLVELSLVEYAMLKFPPSQLAAAAVYTAQCATYGFKQWSKTCEWHTNYSEDQLLECSSLMVDFHKKAGTGKLTGAHRKYCTSKFIFTAKREPASFLLEN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06386 416 SUPERFAMILY Cyclin-like 292 410 IPR036915 -
Vifa1g06386 416 Gene3D - 179 291 - -
Vifa1g06386 416 SMART Cyclin_C_2 293 410 IPR004367 -
Vifa1g06386 416 Pfam Cyclin, N-terminal domain 165 291 IPR006671 -
Vifa1g06386 416 FunFam G2/mitotic-specific cyclin-1 281 405 - -
Vifa1g06386 416 Gene3D - 165 401 - -
Vifa1g06386 416 PIRSF Cyclin_A_B_D_E 3 416 IPR046965 GO:0016538|GO:0044772
Vifa1g06386 416 ProSitePatterns Cyclins signature. 195 226 IPR006671 -
Vifa1g06386 416 CDD CYCLIN_AtCycB-like_rpt1 144 288 - -
Vifa1g06386 416 SMART cyclin_7 297 379 IPR013763 -
Vifa1g06386 416 SMART cyclin_7 200 284 IPR013763 -
Vifa1g06386 416 SUPERFAMILY Cyclin-like 154 290 IPR036915 -
Vifa1g06386 416 PANTHER CYCLINS 124 382 IPR039361 -
Vifa1g06386 416 Pfam Cyclin, C-terminal domain 293 403 IPR004367 -
Vifa1g06386 416 CDD CYCLIN_AtCycB-like_rpt2 293 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06386 Vifa-Chr1 994528413 994531637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06386 26 414 Core Cell Cycle Gene Families AT1G20610 57.855 8.50e-163 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06386 K21777 - gmx:100798068 613.994