Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06377 ATGGGAGGTGACGCTGCTGAGAGTGCGACGGAGCCACAAACCACCGACGGAGTTAAGATCAACATTCGTTGCTCCAATGGTTCCAAGTTTTTCGTTCATGTTAGCCTCGATTCCACCGTTCGTTCTTTCAAGGATGTCGTCGCTCAGAACTGCGATATCTCCGCTGACCAACAACGGTTGATTTATAAGGGACGGATCCTCAAGGACGATCAAACCCTTCAAAGCTACGGTTTGGAGGCGGATCACACTGTTCATTTGGTTCGTGGTTTTACGCCTGCCAATTCAACTGGTGGGACTAATACCAGCGGTGCGAATACCACAACTACCAATGCTAGAGCTGCTGGTGCTAATGAGGGTGGGGGATTAGGAGGAGCTGGACTTGGAGCTTCGCTGTTTCCAGGACTAGGTATCAATGGGATGGGTGGAGGTGGTGGTCTCAATAGCTTGTTTGGAGCGGGCCCTCCTGATCTTGATCAATTGCAGCAACCATTAATGTCGAATCCTAATTTAGTGAGAGAAATTATGAACTCGCCTGCCATGCAAAATTTATTAAATAACCCGGATATAGTGCGCAACCTTCTGATGAGTAACCCACAGATGCAAGAGCTCATGGATAGAAACCCTGAGCTGGCACACATACTTAACGATCCAAGCACACTTCGCCAGACACTTGAGGCTACTAGGAACCCTGAGATCATGCGTGAAATGATGCGGAATACAGACAGAGCAATGAGCAATATTGAATCTTCTCCCGAGGGGTTCAACATGCTGAGACGCATGTATGAAAATGTTCAAGAACCATTTTTAAATGCCACCACAATGGCTGGTAATACAGGAAATGACAGTACTGGAATTTTGGGGACTCAAGGTGGCCAAACAAGGAGTCAATCGACCAATCCCTCAACTACCCGTGCTGAAGCAACTTCCCCTGTACCCAATACTAACCCACTTCCTAATCCTTGGTCATCTGCTGCAACCGGAGGTGCCCAAAGTAACGTCAGGAGGTCAACTACTGGTGTGGAAGCTCGGCAGCAGACACCCACTGGCTTAGGTGGGCTTGGTATGCCGGATCTTGAAGGCATGTTGGGTGGAATGCCAGATGCCAGTTCATTTTCCCAATTTATGCAAAATCCAGCTATTTCACAAATGATGCAAAGTATCCTTTCCAATCCTCAAACAATGAATCAGATTCTTGGTATGAATACTGATCAGCGTGGGGTGCCTGATCTAAATTCAATGAGAGAAGTGATGCAAAACCCGGAGTTTCTTCGCATGTTTTCCTCACCCGAGACAATGCAGCAACTCTTGTCTATGCAGCAAGCTCTTATGACTCAGCTTGGTCAGCAGCAATCGACACATGCATTTGCATTTGCACGAGTTGGGCTTGAACCCAGGGTTCTTTCATTCAAACCCTTCTATAAATCCTCGAGTATGTGCTTTCCATTGGGGGAACCAGGTCAAACAGGTGGAGGCACCGGACCAGCGAACAATGTGGGGCTGGAGATGTTATCGAGCATGTTTGGTGGACTTGGAGCTGGGAGCCTAGCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCTACCCAACTTTCCCAGCTTCAAGAGATGGGTTTCTTTGACACGCAAGAAAACATAAGGGCTCTCATTGCTACGTCAGGGAATGTTCATGCAGCAGTTGAGCGACTTTTGGGGAACTCTGAACAGTAG 1716 0.4773 MGGDAAESATEPQTTDGVKINIRCSNGSKFFVHVSLDSTVRSFKDVVAQNCDISADQQRLIYKGRILKDDQTLQSYGLEADHTVHLVRGFTPANSTGGTNTSGANTTTTNARAAGANEGGGLGGAGLGASLFPGLGINGMGGGGGLNSLFGAGPPDLDQLQQPLMSNPNLVREIMNSPAMQNLLNNPDIVRNLLMSNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMAGNTGNDSTGILGTQGGQTRSQSTNPSTTRAEATSPVPNTNPLPNPWSSAATGGAQSNVRRSTTGVEARQQTPTGLGGLGMPDLEGMLGGMPDASSFSQFMQNPAISQMMQSILSNPQTMNQILGMNTDQRGVPDLNSMREVMQNPEFLRMFSSPETMQQLLSMQQALMTQLGQQQSTHAFAFARVGLEPRVLSFKPFYKSSSMCFPLGEPGQTGGGTGPANNVGLEMLSSMFGGLGAGSLAVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALIATSGNVHAAVERLLGNSEQ 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06377 571 SMART uba_6 529 567 IPR015940 -
Vifa1g06377 571 CDD Ubl_Dsk2p_like 18 90 - -
Vifa1g06377 571 MobiDBLite consensus disorder prediction 274 352 - -
Vifa1g06377 571 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 523 568 IPR015940 -
Vifa1g06377 571 Pfam UBA/TS-N domain 529 565 IPR015940 -
Vifa1g06377 571 CDD UBA_PLICs 529 567 - -
Vifa1g06377 571 Gene3D - 6 102 - -
Vifa1g06377 571 MobiDBLite consensus disorder prediction 274 345 - -
Vifa1g06377 571 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Vifa1g06377 571 Pfam Ubiquitin family 20 87 IPR000626 GO:0005515
Vifa1g06377 571 Gene3D - 192 250 - -
Vifa1g06377 571 PANTHER UBIQUILIN 13 566 IPR015496 -
Vifa1g06377 571 FunFam Ubiquitin domain-containing protein DSK2b 512 570 - -
Vifa1g06377 571 Gene3D - 511 571 - -
Vifa1g06377 571 FunFam Ubiquitin domain-containing protein DSK2b 15 101 - -
Vifa1g06377 571 SMART ubq_7 18 89 IPR000626 GO:0005515
Vifa1g06377 571 SUPERFAMILY UBA-like 525 567 IPR009060 GO:0005515
Vifa1g06377 571 SMART CBM 346 397 IPR006636 -
Vifa1g06377 571 SMART CBM 400 435 IPR006636 -
Vifa1g06377 571 SMART CBM 143 184 IPR006636 -
Vifa1g06377 571 SMART CBM 197 236 IPR006636 -
Vifa1g06377 571 FunFam Ubiquitin domain-containing protein DSK2b 194 250 - -
Vifa1g06377 571 SUPERFAMILY Ubiquitin-like 13 103 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06377 Vifa-Chr1 992810735 992815078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06377 18 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 31.429 3.66e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06377 K04523 - gmx:100797539 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06377 1 992810735 992815078 Vifa1g06377 1 992810735 992815078 ECH