Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06374 ATGGACCCTTCCAAGAACACGACTTCTTTTACTCCGAACAACTCTCCCCCGGTTTCCCCTCCACACCCTCCTTCTGAACATGATGACACCCCCACGGAAACAAACCCTATCCCTGAGGCTGCTGAGGGTTCTTCTGAAAATGTTATCATGAAAACTGCTGGGGAAGTTTGGGCTGAGTTAACTGCTGGGGATGATGAAATATATGGAAATGATGGTGGTGATGGTGGTAACGAAGACGGCGGAGCCCAGGATGGTGGTGCTTCTAGGCCTGTGGCGATCGCTGTTACTGCGGACGGTGCAAATGTGCCTGTGATGGGGAGTGGTGGTGCTGTTGGAGATAGTGCTAAGGGTTCAAAGAAAAGAAAAAGCAATCAAGTGAAAAACCCTCCTCCAGGAACTCCTACTTGTCCTGAATGCAAAAGACAGTTTGCAACATGGAAGGCAGCCTTTGGACATATGAGAAAGCACCCTGAACGCCAACACCGTGGTTTTTTTCCACCACCTACTTTTGAACCACCACAAGTGCCTGCGGCTGAGGGTGATGGTGGTAATCAGGTTGACGAAGAAGTGCAACATGTTGTTAGAGGACTTATAGTTGATTTGAATCGTTCCATTAGAGGAGAAGAAGGGTCTTCTGCTGGCGGAGGCAGTGCTAGAAAAAGGAGAAGCCAACCAGCAGTACTTGAACAACCACCGGGGTTCTCAGCACCACTTCCGCCATCACAGAGGTCTGCTGACATGAGTAGGAATAGGAGAGATGAACCAGCACCACCACCTGCAGCGGATGATGACCAAAATGAGAATGGAAGAAACAAAGGTTTTGATTTAAATAAATTACCTTCTGATGATGACGATGATGATGATGAAACCGGAGAGAATTGA 882 0.4819 MDPSKNTTSFTPNNSPPVSPPHPPSEHDDTPTETNPIPEAAEGSSENVIMKTAGEVWAELTAGDDEIYGNDGGDGGNEDGGAQDGGASRPVAIAVTADGANVPVMGSGGAVGDSAKGSKKRKSNQVKNPPPGTPTCPECKRQFATWKAAFGHMRKHPERQHRGFFPPPTFEPPQVPAAEGDGGNQVDEEVQHVVRGLIVDLNRSIRGEEGSSAGGGSARKRRSQPAVLEQPPGFSAPLPPSQRSADMSRNRRDEPAPPPAADDDQNENGRNKGFDLNKLPSDDDDDDDETGEN 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06374 293 MobiDBLite consensus disorder prediction 154 293 - -
Vifa1g06374 293 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 79 191 - -
Vifa1g06374 293 MobiDBLite consensus disorder prediction 61 139 - -
Vifa1g06374 293 ProSitePatterns Zinc finger C2H2 type domain signature. 136 156 IPR013087 -
Vifa1g06374 293 MobiDBLite consensus disorder prediction 1 48 - -
Vifa1g06374 293 MobiDBLite consensus disorder prediction 246 279 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06374 128 186 C2H2 Transcription Factor Family AT4G35280 52.542 1.78e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g06374 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06374 - - psat:127121511 325.865