Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06370 ATGGGTCTTTGTTTTTCAACACTCTCTCGCCTACCACCACCCTCTTCCCTCAACATCCTTCCCTCTTCAGGTTGTAATGATAAGAGTAAAGTTTGGGAGATGGGAAGTAATGAAAGTGGAAAGCTTCTAGAAATGTCAAACTTGAAGGTGTTTAGCTATGGAGATTTGAAAATTGCAACAAAGAGTTTCAAGTCAGATGCTTTGCTTGGGGAAGGTGGTTTTGGTAAAGTGTATAAAGGTTGGCTAAATGCTGAAACACTTGCTCCTGCTAAAGCTGGTTCTGGAATGATGGTGGCTATCAAGAAAATGAAACCTGATAGTTTGCAAGGTGTTCAAGAATGGCAGACAGAAATCAACTTTTTAGGAAGTATTTCTCATCCCAACTTGGTCAAGCTATTGGGTTATTGTAGGGATGATGATGAATTTCTCCTTGTGTATGAGTTTATGCCAAGGGGAAGCTTGGAGAACCATCTATTTAGAAGAAATACTAACAGAGAACCACTTTCTTGGAAGTCTCGACTCGAAATAGCTATTGATGCAGCTAGAGGTTTGGCTTTCTTGCATTCTTCAGATAAACAAGTGATATATAGAGATTTCAAGGCTTCTAATATACTTCTTGATGGGAATTACAATGCAAAGATTTCAGATTTTGGGTTGGCTAAATTTGGACCATCAGGGGGAGATTCACACGTGACGACTAGGATCATGGGTACACATGGTTATGCTGCCCCAGAATACATTGCAACAGGTCATTTGTATGTGAAGAGTGATGTTTATGGATTTGGTGTAGTGCTACTTGAAATGTTGACTGGATTGCAAGCACATGATTCAAAAAGACATTCAGAGCAGCAGAATCTGGTCGAATGGATTAAGCCTTTTCTCTCGAATAAAAGAAAGTTGAAAAGTACCGTAATGGATTGTAGGTTAGAGGGCCAATATTCACCAAAGGCAGTGTTAGAAACAGCTAAGCTTATTCTTAAATGCCTTGAACATGACCCTAAAAAACGCCCTTCTATGAAAGATGTTTTGGAAACATTGGAAGGCATAAAAGCTATTAAAGATAGAAGGAAGATATCCAAGAATCACTTGCACTAA 1095 0.3909 MGLCFSTLSRLPPPSSLNILPSSGCNDKSKVWEMGSNESGKLLEMSNLKVFSYGDLKIATKSFKSDALLGEGGFGKVYKGWLNAETLAPAKAGSGMMVAIKKMKPDSLQGVQEWQTEINFLGSISHPNLVKLLGYCRDDDEFLLVYEFMPRGSLENHLFRRNTNREPLSWKSRLEIAIDAARGLAFLHSSDKQVIYRDFKASNILLDGNYNAKISDFGLAKFGPSGGDSHVTTRIMGTHGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLQAHDSKRHSEQQNLVEWIKPFLSNKRKLKSTVMDCRLEGQYSPKAVLETAKLILKCLEHDPKKRPSMKDVLETLEGIKAIKDRRKISKNHLH 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06370 364 ProSiteProfiles Protein kinase domain profile. 63 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06370 364 PANTHER OS01G0588500 PROTEIN-RELATED 41 349 - -
Vifa1g06370 364 Gene3D Phosphorylase Kinase; domain 1 34 148 - -
Vifa1g06370 364 Gene3D Transferase(Phosphotransferase) domain 1 149 363 - -
Vifa1g06370 364 FunFam Serine/threonine-protein kinase BIK1 31 148 - -
Vifa1g06370 364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Vifa1g06370 364 Pfam Protein tyrosine and serine/threonine kinase 66 346 IPR001245 GO:0004672|GO:0006468
Vifa1g06370 364 CDD STKc_IRAK 69 349 - -
Vifa1g06370 364 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 149 360 - -
Vifa1g06370 364 SUPERFAMILY Protein kinase-like (PK-like) 38 351 IPR011009 -
Vifa1g06370 364 ProSitePatterns Protein kinases ATP-binding region signature. 69 102 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06370 Vifa-Chr1 992249055 992250555 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06370 49 346 Glycoside Hydrolase AT3G07070 47.157 2.09e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g06370 PK_Tyr_Ser-Thr 7.4e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06370 - - gmx:100794193 505.753