Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06364 ATGGATTCCTCGCTCACTAACCTACTTCTCTTCAACAACACCGTTCAACCAGAGTTGATGAGAAGCGTGCATGTATATCGCGGTGAATGTGACGGAGAAGAAACGGAAGTTGAAAGAGAGTTTGTGTTTTCTGAAACTGCTCCCTATGTTGAAATGCAAGCTACTCCGATTTTCACATTGTTGAAATCTTTTGCGTGTCGACAAGTTTCTCAAGGCGATAAGAATGGAGTTTGGCTTTGTGCTTTTGCTTTTCACGCTTGTAATTCGCCTCAATTTTCTCACATTCCATCTTTTTTGTTGCTTACAAGAAATCCAAAGCTTCATGCTATTCCAAACTTGCTTAATGATCTCCAAATCATATACAAGTTGAACCCGAAGGAGGAACACAGTGAAATACAAGACGACTCTACAATGGACAAAGCGAAAGGAAATAACAATGAATGCCAGCCAGTGAAAAAAGTCTCGTTGGTGTTTGAACAAGATCTCAATTACCTTCCTTATGAAAAAGAAGAGTCTGAGTTACTGGATGACGGGACAGACTTTGAAAGTTCTTCAGGTTTTGTTGAAAAGAAAAAGAGGGCACCAAGTTACCATGTAGCAAAAATTACTTTATCAGATTTAGTCAAGTACTTTGATATGCCAATTGCTGAAGCGGCAAAAAAACTACATGTTGGCCTTACTGTTCTCAAAAGAAAGTGCAGAGAATTTGGTATTCCTCGCTGGCCTCATAGGAAGATCAAATCACTTGAGAGCCTCATTCAAAATCTTCAGGAAGAGGCAAAACATCAGGAAATGGAGAACAAAGCTGCAGCAATGGCAGCGTTAAGGAGGCAAAAGATGTTGGAAAGTGAAAAGGAAAACATAGAGAAGATGCCTTTCATGGATATACGAACTGAGACTAAAAGACTCAGACAAGATATTTTCAAGAGAAGACACCGAGCTAGAGTAGTTGAAAAACAGAATTCTGCAGTAGCAAGCACTTAG 984 0.3963 MDSSLTNLLLFNNTVQPELMRSVHVYRGECDGEETEVEREFVFSETAPYVEMQATPIFTLLKSFACRQVSQGDKNGVWLCAFAFHACNSPQFSHIPSFLLLTRNPKLHAIPNLLNDLQIIYKLNPKEEHSEIQDDSTMDKAKGNNNECQPVKKVSLVFEQDLNYLPYEKEESELLDDGTDFESSSGFVEKKKRAPSYHVAKITLSDLVKYFDMPIAEAAKKLHVGLTVLKRKCREFGIPRWPHRKIKSLESLIQNLQEEAKHQEMENKAAAMAALRRQKMLESEKENIEKMPFMDIRTETKRLRQDIFKRRHRARVVEKQNSAVAST 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06364 327 ProSiteProfiles RWP-RK domain profile. 184 269 IPR003035 -
Vifa1g06364 327 Coils Coil 246 273 - -
Vifa1g06364 327 PANTHER PROTEIN RKD4 156 315 IPR044607 GO:0003700
Vifa1g06364 327 Pfam RWP-RK domain 201 249 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06364 Vifa-Chr1 990788172 990791205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06364 15 327 AtRKD Transcription Factor Family AT4G35590 47.720 4.48e-85 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Vifa1g06364 RWP-RK 2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06364 - - gmx:100306328 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06364 1 990788172 990791205 Vifa1g06364 1 990788172 990791205 ECH