Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06358 ATGGCAAAAGCAATATCTCTAACACACCACCTCTCCTTCCTCCTACCTCACACCCCTTCCCGATTCATAACCTCTTCTACATTCTTCCATCCACTCCGCTTCCTCTCATCAACACCAACCCCCTACCCACTCCAATACGAACTTATCATAAACCGCCCCGACCTCCCCAAACCTAACCCCCACCGTCGAACCGCTAACCCCCCCACCTCACCCGAACCAAACCAACCCGAGCCGTCTCTCCATGACTGGGCCGACGATAAACTCTCCACCGAACCCGGTTCGTCTGAACTCGATAAAGCCAAGAGGAAATACTACAACAAACGGAGGAAGAGAATGTACGGGTCCGATTCCGATGACGATCATCGGAGAAATGAACAACAGTTTGTGGAGATGAAACCTGAAGTGGTGGAACTGAGAACTCTGCATAAGAGAGAGGAGGAATTGTATTTTTACGACGCTTTTGCATATCCGTGGGAGAAAGATAAACATTACAAAATGGTTTATCAATTGGAGAAAAAGTTTTTTCCTAATCAGTGTTTGGATAAAGCTTTTCTTCAACCTGGTCAATCCAATTCAAATTTGAATGCGAATGCCAATGCTAGGGTTAGAAACATGAAAGTTGGTGTTTTTGGTGGGGACAATGAGAATGAAGGTGAAAAGGTTGGTGATGATGATAACAAGTTGGTGTTTTTTGATGAGAATGTGAAAGGGGAAGACAGAGAAAATTGTAACAAGGTTGAGAATACAGATCATAGTGAGAAGAAGGTTGAGGAGTTTTTTAAGGGTTTGAAGAAAGATGTTCAAGTTGTGGAGCCGTTTTTGTCTTCCAGGAGGACTGGTCTTCCTCCTGTTTGGGATTCTCCGCATGGGACAGTGCTTTTGATTAACAAACCTAAAGGTTGGACTTCATTCACTGTTTGTGGAAAGCTACGTCGCCTTGTTAAAGTGAAAAAGGTTGGCCATGCTGGAACTCTTGATCCAATGGCAACTGGTTTATTGATTGTTTGTGTTGGCAAATCAACAAAACTGGTGGATAGATATCAAGGGATGATTAAGGGTTATAGTGGGGTTTTCCGCTTAGGGGAGGCTACTTCAACATGGGATGCTGATTCACCAGTCATTCAGCGTGAGCCATGGGAACACATCAAAGATGAGGACATAAAGAAAAGTGCCTTGTCCTTTTGTGGGGAGATTTGGCAAGTTCCTCCTATGTTCTCTGCTATTAAAGTTGGAGGTGAAAAGATGTATGATAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAATTTGACATAGAGCGTAGCTTGGATGACAGACAAAATTTGATTTTTAGAGTGGTTTGTTCTAAAGGGACATATATTCGGTCACTCTGTGCAGATTTTGGGAAGGCTCTTGGCAGTTGTGCTCATTTAACGGCTCTCCGAAGAGATTCAATTGGACAATATTTAGCAGATGATGCATGGGAGTTTCAAGAGCTGGAAGAGTCTATCACCAAAACTTATCTTTAA 1530 0.4307 MAKAISLTHHLSFLLPHTPSRFITSSTFFHPLRFLSSTPTPYPLQYELIINRPDLPKPNPHRRTANPPTSPEPNQPEPSLHDWADDKLSTEPGSSELDKAKRKYYNKRRKRMYGSDSDDDHRRNEQQFVEMKPEVVELRTLHKREEELYFYDAFAYPWEKDKHYKMVYQLEKKFFPNQCLDKAFLQPGQSNSNLNANANARVRNMKVGVFGGDNENEGEKVGDDDNKLVFFDENVKGEDRENCNKVENTDHSEKKVEEFFKGLKKDVQVVEPFLSSRRTGLPPVWDSPHGTVLLINKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKSTKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKSALSFCGEIWQVPPMFSAIKVGGEKMYDKARRGESIELSPRRISIFQFDIERSLDDRQNLIFRVVCSKGTYIRSLCADFGKALGSCAHLTALRRDSIGQYLADDAWEFQELEESITKTYL 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06358 509 FunFam tRNA pseudouridine synthase B 286 508 - -
Vifa1g06358 509 Hamap tRNA pseudouridine synthase B [truB]. 289 508 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g06358 509 Pfam tRNA pseudouridylate synthase B C-terminal domain 462 504 IPR032819 -
Vifa1g06358 509 MobiDBLite consensus disorder prediction 60 75 - -
Vifa1g06358 509 CDD PseudoU_synth_EcTruB 292 502 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g06358 509 Gene3D Pseudouridine synthase 286 508 - -
Vifa1g06358 509 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 174 507 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g06358 509 MobiDBLite consensus disorder prediction 110 128 - -
Vifa1g06358 509 MobiDBLite consensus disorder prediction 52 128 - -
Vifa1g06358 509 NCBIfam tRNA pseudouridine(55) synthase TruB 291 500 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g06358 509 MobiDBLite consensus disorder prediction 79 102 - -
Vifa1g06358 509 SUPERFAMILY Pseudouridine synthase 291 503 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vifa1g06358 509 Pfam TruB family pseudouridylate synthase (N terminal domain) 311 461 IPR002501 GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06358 Vifa-Chr1 990010259 990015524 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06358 292 483 NAC Transcription Factor Family AT3G57150 32.812 2.35e-19 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06358 K03177 - gmx:100793939 678.322