Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06342 ATGGGTGGACAAGGGAAACGCTCGCAATGCAAAATGGTGGTACTCAACTTTCCACACTGTGACAACCATGATTGGTGCAGGTGTTCATGTGTCCGGTTTCGATTCTCAGTTAGGGGCCTGAGAAGTTTTCAGGTGGCATACAGTCTCCTTACTTCTGCATCTTTAACTTCAATTATGATTCAATGGATGCTCAAAAATGAAGCATACTTAGTTGGAGATATTGGAACTTCTATTAAACAATCATTTTTAAGATTACCCGAATTTGAGCTTTTATACACGGTGAGACCTGAAATAATTGTGGTAATGATTAAATCATGCCCTTTGTTTAAACACGGTGAGACCGAGTGCTCTTATAGTAGTGCAGGTTCCTGCAAGTTGCAACATTGTGATGAAATTATCTCCTGGTGCACAACCTGTTGTCGAGCTACTTCTCTATATGGAGTGACCCAGTTGTCATCATCATTATCAGCATTTGCAAGACTTTTTACTCATGTGCCCTCTTCTCCCGGCCCTGCAGGAACAAGTCTACAGGAAAAAGTATTTCCTAAAAAACTTGGTGAACCGCTATGCCAATACTATATGAGAAACGGGGACGCTAAATTTGGATTGGTTTGTCGATATCATCATCCACAGGTCCACGTTGTTGCACGTCCAGTTCTTAGTCCTGTTGGTCTTCCTTTACGCCCGATATAA 693 0.4185 MGGQGKRSQCKMVVLNFPHCDNHDWCRCSCVRFRFSVRGLRSFQVAYSLLTSASLTSIMIQWMLKNEAYLVGDIGTSIKQSFLRLPEFELLYTVRPEIIVVMIKSCPLFKHGETECSYSSAGSCKLQHCDEIISWCTTCCRATSLYGVTQLSSSLSAFARLFTHVPSSPGPAGTSLQEKVFPKKLGEPLCQYYMRNGDAKFGLVCRYHHPQVHVVARPVLSPVGLPLRPI 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06342 230 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 186 211 IPR000571 GO:0046872
Vifa1g06342 230 ProSiteProfiles Zinc finger C3H1-type profile. 184 212 IPR000571 GO:0046872
Vifa1g06342 230 PANTHER PROTEIN PHOSPHATASE RELATED 166 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06342 Vifa-Chr1 988333351 988334229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06342 143 229 C2H2 Transcription Factor Family AT5G18550 44.318 8.77e-16 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g06342 zf-CCCH 0.00025 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06342 - - gmx:100805017 127.872