Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06340 ATGATCATGCTAACACCATTTCTAGCTATGGCTATCACACTCATTCTCACCATATTTCTATATGGTTTATACCAAACACTAAATCTCAAAACACCTGCATTCATAAATTGGCCTTTTGTTGGTATGCTACCAAGATTCCTATGGAATGTTTCACAAATTCATGAATTTTCAGCTCATTGGTTGGAACAAAAAGGTGGAACAGTTGAGTTCATAGGACCATGGTTTACCAACATGGATATTGTAGTGACAGCTGATCCAATGAATGTCCACTACATTATGAGTAAGAGTTTCGACAACTTTGTGAAAGGCGATTTGTTTCGCGAAATGTTTCAAGCTTTTGGTGAAGGTATTTTTACTACCGATTCGATTCAATGGAAATACCATAGGAATCTTCTCCAATATCTTTTTAATAGAAGCTTTGAATCTTTTCAAGAAAAAATCATTCACAACAAAGTTGAGAAATCTTTGATTCCACTATTGAATCATGTTGTTCAACAAAAAGACTCCGTGGTCGATTTACAAGATGTTTTCAACCGCTTCACGTTTGATAACATTTGTTTGATAATTCTTGGACAGGATCCTAATTGTCTTTCCATTGATTTCCCTGAGGTTGCCGTCGAGAAGGCTTTTAACCAAGCTGAAGAATCCATCTTCTATAGACACATTGTGCCGGAATGTGTTTGGAGGTTACAAAAATGGCTTCAAATTGGCCAAGAGAAAAAAATGACCGAGGCATGCAAAATATTTGATAACTTCCTATATGATTGTATAGCCTCAAAGCGCCAAGAGCTTAAGAAAAAATGTAACAAAAATGTTGACACTGAGAAAAATCAACACGTTGATTTGCTAACCGCGTTGATTCGAGAAGAAGAAGGAGAAAGAAAGGATAGTAAAAGTGGTGACAAGTTTCTAAGAGATTCGGCATTCAATCTGTTTGTAGCGGGGAGAGATACTCTAACATCGGCGCTTACATGGTTATTTTATCTTATTGCTACACACCCTTTAGTGGAAACCAATATTCTGAAAGAGATAAAAGAAAACTTTGGACAGAAAGAGAAGCCTTGGATTTTAAGTGTTGATGAGACGAAAAAGCTTGTTTATCTCCATGGTGCTATATGTGAGGCGTTAAGGCTATTTCCACCTATACCTTTTGAGAGAAAGGAAGCTGTTAAAGAAGATATACTTCCAAGTGGTCATCATGTTTATCCTAATAAGATGATATTGTTTTCTTTGTATGCAATGGGAAGGTTTGAAGATACTTGGGGAAAAGACTGCATGGAATTTAAGCCAGAGAGGTGGATTTCTGAAAGAGGAGCCAATGTTTATGTTCCATCTTACAAATTCTTTAGCTTTAATGCTGGACCTAGGACTTGTTTGGGAAGAGACTTAGCTTTCCTTCAAGTTAAGATGGTCACTGCTTCTATTTTGTGGAATTATTGTGTTCATGTTAAGGAAGGAACTCGTCTTACTCCAACTCTTTCAATTGTACTTCTCACAAAAGAAGGTCTCAATGTTAAGATAACCAAAAGGATGTAG 1536 0.3659 MIMLTPFLAMAITLILTIFLYGLYQTLNLKTPAFINWPFVGMLPRFLWNVSQIHEFSAHWLEQKGGTVEFIGPWFTNMDIVVTADPMNVHYIMSKSFDNFVKGDLFREMFQAFGEGIFTTDSIQWKYHRNLLQYLFNRSFESFQEKIIHNKVEKSLIPLLNHVVQQKDSVVDLQDVFNRFTFDNICLIILGQDPNCLSIDFPEVAVEKAFNQAEESIFYRHIVPECVWRLQKWLQIGQEKKMTEACKIFDNFLYDCIASKRQELKKKCNKNVDTEKNQHVDLLTALIREEEGERKDSKSGDKFLRDSAFNLFVAGRDTLTSALTWLFYLIATHPLVETNILKEIKENFGQKEKPWILSVDETKKLVYLHGAICEALRLFPPIPFERKEAVKEDILPSGHHVYPNKMILFSLYAMGRFEDTWGKDCMEFKPERWISERGANVYVPSYKFFSFNAGPRTCLGRDLAFLQVKMVTASILWNYCVHVKEGTRLTPTLSIVLLTKEGLNVKITKRM 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06340 511 CDD CYP86A 69 503 - -
Vifa1g06340 511 SUPERFAMILY Cytochrome P450 34 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 Gene3D Cytochrome P450 28 511 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PANTHER CYTOCHROME P450 24 492 - -
Vifa1g06340 511 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 451 460 IPR017972 GO:0005506|GO:0016705
Vifa1g06340 511 PRINTS E-class P450 group I signature 303 320 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PRINTS E-class P450 group I signature 323 349 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PRINTS E-class P450 group I signature 448 458 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PRINTS E-class P450 group I signature 458 481 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 Pfam Cytochrome P450 36 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PRINTS P450 superfamily signature 314 331 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PRINTS P450 superfamily signature 370 381 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PRINTS P450 superfamily signature 449 458 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06340 511 PRINTS P450 superfamily signature 458 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06340 Vifa-Chr1 987895732 987897267 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06340 2 510 Cytochrome P450 AT2G23180 43.327 8.47e-152 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06340 - - tpra:123904061 828.935