Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06338 ATGCCTAAGGCCACCTCCACCGTGAAACCCGCTGATAACCTGTTGAAGCGCAAGGGCGCTGGTGCTGGAACTAAGCAATCGAAGAAAGCTGCGAAGGATCCTAACAAGCCTAAGAGGCCTCCAAGTGCTTTCTTCGTTTTCATGGCTGAGTTTAGGGAGTCTTTCAAGAAGGAGAATCCTAACAACAAATCTGTTGCTGTGGTTGGCAGGGCTGGAGGAAAAGAGTGGAAATCACTCTCTGAAGCTGAGAAGGCTCCTTATGTTGCTACTGCAGAGAAGAAGAAGGAGGAGTATGAGAAGGCTATCCGTGCCTACAACATTTCATTGACTGAAGGAAAAGCTGCATCTGAGGAAGAGGGATCTGACAGGTCCAAGTCTGAAGTCAATGATGAAGATGAAGATGATGAGTCTGACGAGTAG 420 0.4786 MPKATSTVKPADNLLKRKGAGAGTKQSKKAAKDPNKPKRPPSAFFVFMAEFRESFKKENPNNKSVAVVGRAGGKEWKSLSEAEKAPYVATAEKKKEEYEKAIRAYNISLTEGKAASEEEGSDRSKSEVNDEDEDDESDE 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06338 139 MobiDBLite consensus disorder prediction 107 139 - -
Vifa1g06338 139 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 9 137 IPR031061 -
Vifa1g06338 139 Gene3D High mobility group box domain 21 122 IPR036910 -
Vifa1g06338 139 Coils Coil 88 108 - -
Vifa1g06338 139 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Vifa1g06338 139 MobiDBLite consensus disorder prediction 1 41 - -
Vifa1g06338 139 SUPERFAMILY HMG-box 25 108 IPR036910 -
Vifa1g06338 139 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Vifa1g06338 139 CDD HMG-box_AtHMGB1-like 38 91 - -
Vifa1g06338 139 SMART hmgende2 36 107 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06338 Vifa-Chr1 987859963 987860959 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vifa1g06338 HMG_box 1.7e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06338 K25507 - gmx:100499992 187.578