Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06336 ATGATCATGTTAATATCATTTCTGGCTATGGCTCTCACACTCATTCTCCCCTTATTCCTATATGCTTTTTACCAAACACTAAATCTCAAAACTCCTGCCTTCACAAATTGGCCTTTTGTTGGTATGCTACCAACACTCCTTTGGAACGTTTCACGTATTCATGATTTTCAAGTCCAAATGTTGAAATCAAAAGGTGGCACAGTTGAGTTCTTAGGACCTTGGTTTACCAAAATGAAAGCTGTAATCACTGCTGATCCAGAGAATGTCCACCACATCATGAGCAAGAGTTTCGACAACTTTGTGAAAGGCGATTTGTTTCGCGAAATGTTTCAAGCTTTTGGTGAAGGTATTTTCACTACCGATTCGATTCAATGGAAATACCATAGGAATCTTCTCCAATATCTTTTCAAACAAAGGAGCTTTGAAACTTACCAAGAGAAAGTCATTCACAACAAAGTTGAGAAATCATTGTTTCCACTACTCAATCACGTTCAACAAAAAGGATCGATGGTCGATTTACAAGATATTTTCAACCGTTTCACGTTTGATAATATTTGTTTGATAGTTCTTGGAAATGATCCGAATTGTCTTTCCATAGACTTCCCTCAAGTTGCGGTCGAGAAGGCTTTTAACCAAGCGGAAGAATCCATCTTCTATAGACACACTGTGCCAGGGTGTGTTTGGAGGTTGCAAAGATGGCTTCAAGTTGGCCAAGAGAAAAAAATGACCGAGGCATGCAAAGTATTTGACAAGTTTCTATATGATTGCATAGCTTCAAAGCGCGAAGAGCTTTTAAAAAATTGTAACAAAAATGAGAAAAATCATCATGTTGATTTGCTAACGGCGATGATTGGAGAAGAAAACTCAAAGGGGAGCGAAAATGCTAACAAGTTTCTAAGAGATTCGGCATTCAATCTGTTTGTAGCGGGGAGAGATACTCTAACTTCGGCGCTTACATGGTTATTTTATCTTATTGCTACACACCCTTTAGTGGAAACCAATATTCTGAAAGAGATAAAAGAAAATTTTGGACACAAAGAGAAGCCTTGGATTTTAAGTGTTGATGAGACGAAAAAGCTTGTTTATCTCCATGGTGCTATATGTGAGGCGTTAAGGCTATTTCCACCTATACCATTTGAGAGAAAGGAAGCTGTTAAAGAAGATATACTTCCAAGTGGTCATCATGTTTATCCTAATAAGATGATATTGTTTTCTTTGTATGCAATGGGAAGGTTTGAAGATACTTGGGGAAAAGACTGCATGGAATTTAAGCCAGAGAGGTGGATTTCTGAAAGAGGAGGCAATGTTTATGTTCCATCTTACAAATTCTTTAGCTTTAATGCTGGACCTAGGACTTGTTTGGGAAGAGACTTAGCTTTCCTTCAAGTTAAGATGGTCACTGCTTCTATTTTGTGGAATTATTGTGTTCATGTTAAGGAAGGAACTCGTCTTACTCCAACTCTTTCAATTGTACTTCTCACAAAAGAAGGTCTCAATGTTAAGATAACCAAAAGGATGTAG 1521 0.3767 MIMLISFLAMALTLILPLFLYAFYQTLNLKTPAFTNWPFVGMLPTLLWNVSRIHDFQVQMLKSKGGTVEFLGPWFTKMKAVITADPENVHHIMSKSFDNFVKGDLFREMFQAFGEGIFTTDSIQWKYHRNLLQYLFKQRSFETYQEKVIHNKVEKSLFPLLNHVQQKGSMVDLQDIFNRFTFDNICLIVLGNDPNCLSIDFPQVAVEKAFNQAEESIFYRHTVPGCVWRLQRWLQVGQEKKMTEACKVFDKFLYDCIASKREELLKNCNKNEKNHHVDLLTAMIGEENSKGSENANKFLRDSAFNLFVAGRDTLTSALTWLFYLIATHPLVETNILKEIKENFGHKEKPWILSVDETKKLVYLHGAICEALRLFPPIPFERKEAVKEDILPSGHHVYPNKMILFSLYAMGRFEDTWGKDCMEFKPERWISERGGNVYVPSYKFFSFNAGPRTCLGRDLAFLQVKMVTASILWNYCVHVKEGTRLTPTLSIVLLTKEGLNVKITKRM 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06336 506 Pfam Cytochrome P450 33 499 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PANTHER CYTOCHROME P450 23 487 - -
Vifa1g06336 506 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 446 455 IPR017972 GO:0005506|GO:0016705
Vifa1g06336 506 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PRINTS E-class P450 group I signature 443 453 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PRINTS E-class P450 group I signature 453 476 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 CDD CYP86A 69 498 - -
Vifa1g06336 506 Gene3D Cytochrome P450 22 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PRINTS P450 superfamily signature 365 376 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PRINTS P450 superfamily signature 444 453 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 PRINTS P450 superfamily signature 453 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06336 506 SUPERFAMILY Cytochrome P450 32 505 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06336 Vifa-Chr1 987711882 987713402 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06336 2 505 Cytochrome P450 AT2G23180 43.275 5.91e-155 450
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06336 - - tpra:123904061 817.379