Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06332 ATGTCGTGTTCGTCTTCATCGGGATCGGATGATGATAATGAAGGGTTTGAGTCTTATCGGAAAGGTGGTTACCATGCCGTTAGAGTCGCCGATCGTTTTGCGGTGGGTAGGTATATAGCTCAGAGGAAGCTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTATCACCTCTTCATATGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGACTTTGTTCAGGCTGCTCTCCACGAGGTCGATGTTCTTTCATGCATTGCTGACGGTGACCCATCAAATTCAAAGTTTGTTATCCAATTGATTGATCACTTTAAGCACACAGGTCCCAATGGACAACACCATTGCATGGTCCTTGAGTTTCTCGGCGATAGCTTGCTTCGTTTGATCAGATATAACCGTTACAAAGGTCTTCCACTGAATAAAGTTAGAGAGATATGTAAATGCATTTTGACTGGTTTGGATTACTTGCATAGTGAACTCGGTATAATCCACACTGACTTAAAACCTGAAAACATTCTTCTATTTTCAACTATTGACCCTGCCAAAGATCCTTTTAGTTCTGGTTGCTCCCCAATTTTAGAACGGCCGGAGGGAAACACGAACGGTGGACTTACTAGTCTTATTGAGAAAAGGTTGAAGAGAAGAGCAAGGAGTGCAGTTGCTAAAATATCAGGAAGAACAGCTTCGATTGAAGGAAGAGGAGAAGCTGGAAAATCTCGTAGAAATATTGATGGGATTGATGTGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGATGATAAGAAGTTTGCAGAAGAAATACAAACAAGGCAGTATAGAGCCCCTGAAGTTATACTGAAGTCCGGTTATTCCTTCCCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACAGGAGATATGTTATTTACACCCAAAGGTGGAAAGGATTATAGCGAGGATGAGGATCATCTTGCCCTGATGATGGAACTCCTAGGAAAGATGCCGCGGAAGATTGCTATTGCTGGAGCTCAATCCAAGGACTACTTTGACAGGCACGGTGATCTAAAAAGGATTCGAAGGCTAAAATATTGGCCACTTGACAAATTACTAATTAATAGATATAAATTTTCAGCGAATGACGCACGTGAGTTTTCAGAATTTCTTTCGCCACTTTTTGATTTCGCACCAGAAAAACGACCAACTGCACAACAGTGCCTGCAACACCCCTGGCTGAACTGCAAGGAGTCATCACCAAATGAAACGAGAAGCGAATCTACTGTCGAAAAGGTTAATGTTGGTATGAGCAACCTACAAATCAAGGTAGGAAAGTGA 1338 0.426 MSCSSSSGSDDDNEGFESYRKGGYHAVRVADRFAVGRYIAQRKLGWGQFSTVWLAYDTITSSYVALKIQKSAADFVQAALHEVDVLSCIADGDPSNSKFVIQLIDHFKHTGPNGQHHCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKCILTGLDYLHSELGIIHTDLKPENILLFSTIDPAKDPFSSGCSPILERPEGNTNGGLTSLIEKRLKRRARSAVAKISGRTASIEGRGEAGKSRRNIDGIDVRCKIVDFGNACWDDKKFAEEIQTRQYRAPEVILKSGYSFPVDMWSFACIAFELATGDMLFTPKGGKDYSEDEDHLALMMELLGKMPRKIAIAGAQSKDYFDRHGDLKRIRRLKYWPLDKLLINRYKFSANDAREFSEFLSPLFDFAPEKRPTAQQCLQHPWLNCKESSPNETRSESTVEKVNVGMSNLQIKVGK 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06332 445 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 226 424 - -
Vifa1g06332 445 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06332 445 CDD STKc_SRPK 27 413 - -
Vifa1g06332 445 FunFam Protein kinase superfamily protein 24 123 - -
Vifa1g06332 445 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06332 445 Pfam Protein kinase domain 39 177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06332 445 SUPERFAMILY Protein kinase-like (PK-like) 32 416 IPR011009 -
Vifa1g06332 445 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Vifa1g06332 445 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06332 445 FunFam Serine/threonine-protein kinase SRPK 115 413 - -
Vifa1g06332 445 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Vifa1g06332 445 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Vifa1g06332 445 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06332 Vifa-Chr1 987322906 987325456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06332 4 414 EF-hand Containing Proteins AT5G22840 50.108 1.63e-164 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Vifa1g06332 Pkinase 5.4e-23 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06332 K08832 - gmx:100784192 761.911
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06332 1 987322906 987325456 Vifa1g06332 1 987322906 987325456 ECH