Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06329 ATGGCACCAGGAAATTATTGCAGCTCTCAGGTAGTAGCTATATTAAAAGGTGGTGAGTGTTCCATGGAGGATCAAAATGATGATACTTTGGGGAATTTGAATCAGAATATTGTTGGCAAACCTCCGAGGGATCATTCTGTTAGTATGCGTCATTGCACCAGCTCTTCATGGTTGGCTGATTCGGAATCAAATATTAATACTGTTGGCATTAATTCAAACACAGAAGATAAATCAGAGTTTCCTCTTGTACTAAGATCTGGAAGTTGTTCTGAGAAAGGACCAAAGCAATACATGGAGGATGAGTTTGTATGTGTTGATATTCTTCTTGAATGTAAATGTGTTGCCCAAAAACTAGACCTGCCATCTCCATCAGCATTTTATGGGGTATTTGATGGACATGGTGGTATTGATGCAGCATCATTTATCAAGAAGAACATGTTTAAATTTATAATTGAAGATTCTCAATTCCCATCAAGCATTAAGAAAGCAGTTAAGAATGCATTTGTGAAGGCTGATCATGCATTTAGAGATGCCAGTACACTTGATAATTCTTCAGGAACCACAGCTCTAATAGCCCTTGTCTTGGGAAGGGTCGTGCTGATTGCGAATGCAGGAGATTCGCGTGCGGTGTTAGGGAAGCGTGGTCGAGCGGTTGAACTTTCAAAAGACCATAAACCAAATTGCACATCTGAAAGATTAAGAATTGAAAAACTGGGTGGTGTTATCTATGATGGATACCTAAATGGACAACTATCAGTGGCACGTGCACTAGGAGATTGGCATATAAAAGGTTCAAAAGGTTCAAAAAGTCCATTAAGTTGTGAGCCAGAGTTAGAGGAAATTGTCCTAACAGAAGAAGATGAGTTTTTGATATTAGGGTGTGATGGATTATGGGATGTTATGAGTAGTCAATGTGCTGTTACAATGGTTAGGAAGGAACTTGTGCAACATAATGATCCTAACATATGTGCTAAGGTACTTGTTACTGAGGCACTTCAAAGAAACAGTTGTGATAATCTAACGGTTGTTGTGGTTTGTTTCTCAAAAGATCCACCTTCTAAAATTGAAATTCCTAGATCACATAGGAGAAGGAGTATTTCTGCTGAAGGTCTTGATCTTCTCAAAGGTGTTTTGAATGGTAGATGA 1146 0.3874 MAPGNYCSSQVVAILKGGECSMEDQNDDTLGNLNQNIVGKPPRDHSVSMRHCTSSSWLADSESNINTVGINSNTEDKSEFPLVLRSGSCSEKGPKQYMEDEFVCVDILLECKCVAQKLDLPSPSAFYGVFDGHGGIDAASFIKKNMFKFIIEDSQFPSSIKKAVKNAFVKADHAFRDASTLDNSSGTTALIALVLGRVVLIANAGDSRAVLGKRGRAVELSKDHKPNCTSERLRIEKLGGVIYDGYLNGQLSVARALGDWHIKGSKGSKSPLSCEPELEEIVLTEEDEFLILGCDGLWDVMSSQCAVTMVRKELVQHNDPNICAKVLVTEALQRNSCDNLTVVVVCFSKDPPSKIEIPRSHRRRSISAEGLDLLKGVLNGR 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06329 381 Pfam Protein phosphatase 2C 86 339 IPR001932 -
Vifa1g06329 381 CDD PP2Cc 85 347 IPR001932 -
Vifa1g06329 381 ProSiteProfiles PPM-type phosphatase domain profile. 85 347 IPR001932 -
Vifa1g06329 381 PANTHER PROTEIN PHOSPHATASE 2C 72 345 IPR015655 GO:0004722|GO:0006470
Vifa1g06329 381 SUPERFAMILY PP2C-like 79 348 IPR036457 -
Vifa1g06329 381 Gene3D - 67 352 IPR036457 -
Vifa1g06329 381 ProSitePatterns PPM-type phosphatase domain signature. 126 134 IPR000222 GO:0043169
Vifa1g06329 381 SMART PP2C_4 75 345 IPR001932 -
Vifa1g06329 381 FunFam Probable protein phosphatase 2C 22 70 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06329 Vifa-Chr1 987154739 987156398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06329 78 379 PP2C-type Phosphatase Gene Family AT3G51470 77.152 3.50e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06329 K14803 - gmx:100781874 591.652
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06329 1 987154739 987156398 Vifa1g06329 1 987154739 987156398 ECH