Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06328 ATGGTTAAAGTTTGGTTATTGGCTCTAATGATTCTCTACAATGGCTTCTCTTTAACTGTGTTTGGCATTCATAATTCAACAAGACCTGAATTTGTAAATATTGGAGCTCTCTTCTCTTTCAATACTAGTGTTGGTAAGATTATAAAAATCGCGATCGAAGCTGCTGTTCGAGATGTAAATTCAGATCCAAGTATTCTCGGCGAGACCAAGTTGAAGCTCTCTCTTCAAGAAGATTCTAAATATAGAGGTTTTCTTAGCATTGCTGAGGTTTTACAGGTCATGGCTAGACACAATGTGGCAATAATTGGCCCTCATAGTTCTGTAACAGCTCATGTCATAACTCATATTGCGAACGAGCTTCAAGTTCCTCTTCTCTCGTTTTCAGCTTTAGACCCGACACTTTCTTCGCTTCAATTTCCATTCTTTATTAGAACATGTCACAGTGATCTTTTTCAAATGGCTGCAATAGCAGACCTTGTTGATTACTATGGATGGAAAGAAGTCATTGCTGTATATATTGATGATGACAATGGAAGGAACGGAATCGTTGCATTAGGCGATAAGCTTGCTGAGAGACGTTGCAGGATCTCATATAAAGCACCTGTGAGCCCCGAAGCAACTCCGGAGGAGATTACAAATGTGCTTGTTCAGGTGGCTCTTGCTGAATCAAGAATTATTGTTGTTCATGCTAACACTCTTTGGGGTCCAAAAGTGTTTAGTGTTGCGAAGAATCTTGGAATGATGGGAACTGGTTATGTATGGATAGCCACTGGTTTTCTTTCTGCTATTCTTGATATAAGTAGTCCTCTATCTTCTGATAAAATGGATGAGATCCAAGGAGTGTTGACACCGCGCGTGTACACGCCAGATTCGGAGCTTAAAAGAAAGTTTGTTTCAAAATGGAAAGACTTGACTCGTGGAAATACTGCTAATGGCCCTCTTGGACTTAGTTTTTTGTCTTTCTATGCATATGATACTATTTATGCTCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACAAAATCACCTTTACAAATGATTCAAAACTACTTTCACTACATGGTGACAGCTTGAATCTCGAAGCGTTGAACGTCTTCAACGAAGGAAACACGTTACGTAAAAACATTTATGGGGTTAACATGACTGGTGTGACAGGCTTGTTCAAGTATGCACCTGATGGAAACCTTGTTAATCCTGCATATGAAATCATCAATGTGATTGGAACCGGGTCACGGAGGATTGGTTATTGGTCTAATCACTCTGGATTATCGACCGTTCCTCCAGAAACAATTCTTCCCAAACCAGGAAACAATTTCAGGGAAAGCAAAAAGCTACTCCCTGTGATGTGGCCTGGTGACATAGACCAGAAGCCTCGCGGTTGGGTTTTTCCGAACAACGGAAGGCTATTAAGAATTGGAGTACCGAAAGGCGTTAGTTATCGCCAATTTGTGTCACAAGTACCAGGCTCTGATACATTTCAAGGTTTCTGCATTGATGTGTTTCTCTCTGCAGTTAACCTTTTGCCTTATGCTGTCCCTTACAAGTTTATTCCATATGGAGATGGTAAGAACAATCCTAGTAACACCGAGCTTGTCCGTCTAATAACAACAGGCGAATTTGACGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAAAATGGTGGATTTTACTCAGCCATATGTTGAGTCTGGTTTAGTGGTAGTAGCTCCTGTTAGGGAGTCTGAAACAAGTGCTTTGGCCTTTTTGGCTCCATTTACACCAAGAATGTGGTTTGTCACAGCTTTGTTTTTCATAATAGTTGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGAGGACCACCTAGAAAACAATTGACTACTATTTTTTGGTTTAGCTTTTCAACAATGTTCTTTTCACATAGGGAAAATACAGTGAGCACGCTCGGTCGTTGCGTGCTACTTATATGGTTATTTGTAGTTCTCATTATTACTTCAAGTTACACAGCAAGTCTAACATCAATCCTCACTGTACAACAACTGTCTTCACCAATTAAGGGCATTGAAAGTTTAGTAAATATGAAAGAACCAATTGGTTACAGTCAAGGCTCATTTTCTAAAGATTATTTGATCCAAGAAATCGGTATTGATGAGTCTAGGCTTGTTCCTTTAATAACACCGGAAGAAGTTACTAGAGCACTGACAAAAGGTCCTCAAGATGGTGGTGTTGCTGCTTACATCGATCAACGTGCATATATTGACATCTTCCTTTCAAGCCGGTGTCAGTTTACTGTTGTAGGTCAAGAGTTCACCCGAAACGGCTGGGGATTTGCCTTTCCAAGAGACTCACCATTAGCAGTTGACCTATCAACTGCCATTTTGCAAATGGTAGACAATGGAGACTTACAAAGAATCCATGACAAGTGGCTTTTGAGTAGAGCTTGTTTAACACAGGGTGCAAAGTTTGAAGTTGAAAGACTCAAACTAAAAAGCTTTTGGGGCCTCTATGTGATATGTGGATCAGCTTGTTTGCTTGCTCTACTCATATATATAATACAGATAATAAGACAGTACATGAAGCACCACTCAGAAGAACTTGATTCTCCTGACCAAAACTCTGCCTCAGGATCAACTTGTTTGAGGAGTTTCCTCTCCTTTGTGGATGAAAAAGAAGAGACTGTTAAAAACCGTTCCAAGAGAAAGAAAATGGAGAGAATCTCTTATAGAAGTAGTGAGGGAGGATCAATCTCCATCAGTTCCAATAAAGATTATGTTGCTCAGTCATCTTCATGCATAGCTGGTTCTGTTTCTAATGGTGGAACTGAACAAGTAATTATCAAAGTAGTGTAA 2856 0.3988 MVKVWLLALMILYNGFSLTVFGIHNSTRPEFVNIGALFSFNTSVGKIIKIAIEAAVRDVNSDPSILGETKLKLSLQEDSKYRGFLSIAEVLQVMARHNVAIIGPHSSVTAHVITHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLFQMAAIADLVDYYGWKEVIAVYIDDDNGRNGIVALGDKLAERRCRISYKAPVSPEATPEEITNVLVQVALAESRIIVVHANTLWGPKVFSVAKNLGMMGTGYVWIATGFLSAILDISSPLSSDKMDEIQGVLTPRVYTPDSELKRKFVSKWKDLTRGNTANGPLGLSFLSFYAYDTIYALAHALDAFFKQGNKITFTNDSKLLSLHGDSLNLEALNVFNEGNTLRKNIYGVNMTGVTGLFKYAPDGNLVNPAYEIINVIGTGSRRIGYWSNHSGLSTVPPETILPKPGNNFRESKKLLPVMWPGDIDQKPRGWVFPNNGRLLRIGVPKGVSYRQFVSQVPGSDTFQGFCIDVFLSAVNLLPYAVPYKFIPYGDGKNNPSNTELVRLITTGEFDGAVGDIAITTERTKMVDFTQPYVESGLVVVAPVRESETSALAFLAPFTPRMWFVTALFFIIVGTVVWILEHRVNDEFRGPPRKQLTTIFWFSFSTMFFSHRENTVSTLGRCVLLIWLFVVLIITSSYTASLTSILTVQQLSSPIKGIESLVNMKEPIGYSQGSFSKDYLIQEIGIDESRLVPLITPEEVTRALTKGPQDGGVAAYIDQRAYIDIFLSSRCQFTVVGQEFTRNGWGFAFPRDSPLAVDLSTAILQMVDNGDLQRIHDKWLLSRACLTQGAKFEVERLKLKSFWGLYVICGSACLLALLIYIIQIIRQYMKHHSEELDSPDQNSASGSTCLRSFLSFVDEKEETVKNRSKRKKMERISYRSSEGGSISISSNKDYVAQSSSCIAGSVSNGGTEQVIIKVV 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06328 951 Pfam Bacterial extracellular solute-binding proteins, family 3 485 812 IPR001638 -
Vifa1g06328 951 FunFam Glutamate receptor 583 713 - -
Vifa1g06328 951 Gene3D - 584 711 - -
Vifa1g06328 951 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Vifa1g06328 951 Gene3D - 758 819 - -
Vifa1g06328 951 Gene3D - 467 583 - -
Vifa1g06328 951 Pfam Ligand-gated ion channel 813 844 IPR001320 GO:0015276|GO:0016020
Vifa1g06328 951 CDD GluR_Plant 472 812 - -
Vifa1g06328 951 PIRSF IGluLR_plant 1 936 IPR017103 -
Vifa1g06328 951 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Vifa1g06328 951 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Vifa1g06328 951 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 879 IPR015683 -
Vifa1g06328 951 Gene3D - 148 425 - -
Vifa1g06328 951 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Vifa1g06328 951 SUPERFAMILY Periplasmic binding protein-like II 448 814 - -
Vifa1g06328 951 FunFam Glutamate receptor 709 816 - -
Vifa1g06328 951 FunFam Glutamate receptor 467 583 - -
Vifa1g06328 951 FunFam Glutamate receptor 148 303 - -
Vifa1g06328 951 Gene3D - 50 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06328 Vifa-Chr1 986794531 986797887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06328 5 913 Ion Channels AT3G51480 58.352 0.0 1103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06328 K05387 - gmx:100793320 1479.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06328 1 986794531 986797887 Vifa1g06328 1 986794531 986797887 ECH