Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06327 ATGGCTTCTCTTTCACATCCACGGGAGATTAACATTAAAGGAGGTTGTTCTATCAAACAACCTTCGGTTACACCACAACCACAAGCAGCAACAACAAAATCGATATCTTCAACCACATTATTGTCAAAAAAGCGACCAAGAAATTTTGAAAATTTCGATAAATCAACTTTTGATAAGGATTATGAAACCTCTACTTCTAACAGTGTTGAAAAATCTATTATGACTACAACATCAACATCAAAGAAAAATGAAAAACATGTTAGTGAATCTAAATCGGAGACTAAAGTTGAAAAGGTATTAAATATGCGTGTAAGGGAGAGGTCTACACTTGTTTCTTGGTTGATAAGGAATCATGTTTTATCTCAGGGGACTAAAGTATCTTGTCGTGGTAGAAATAATATTGTCAAAAGAGGGCGTTTATCTTATGATGGTATAGTTTGCGATTGTTGTCAAGTTATTTTTTCTATCACTAAATTTGAGGCTCATGCTGATTGTACAAGACATAGACCATCCACTAGTATTTTGTTGGAAGATGGAAGATCATTGTTAAAATGTCAAAGGGATGCTTTGAATTCGCGTGATCAAAATAAAGATCATTTTGTTGTTGAAGAAAATAACGACAGTGTTTGTTTAGTTTGTGGTCTTGGAGGTAACATAATTCTATGTGATCGATGCCCTTCTTCGTTTCACCTTTGTTGTTTAGGACTCGATCAAGTTCCCGAGAATGATTGGTTCTGTCCAAGTTGTTGTTGCAAAGTATGTCGACGACCCAAATGCAAACAAGAATGTAAAGATCACATGGATAATATTGTTCTTGTTTGTGCTCAATGTGAGAAAAAGTATCACTTTGGATGTTTAAAGTTTATAAACTTTGGATTATGGTATGTGGAGAGTAATAAGAAAAAGAAGGATTGGTTTTGTAGTTTAGCTTGTGGAAACATATTCTTAGACCTAATGAAGTTGTTAGGGAAACCAATTGAGGTTGCGGACAACATAACTTGGACATTAGAGAAAAATGTGAGTAGTGTTATAAATGATGATGGTCAAGATTTTTCTTCTAATAAGTTTAGTCAAAAGAAGAGTAAGTTGAATGCGGCTCTTGGTTTATTGTATGCGAGTTTTAACCCAATTATTGATGTTTTATCAGGAAGAGACTTAATTAAAGATTTGATTTTTAGTAGAGAATCAAAAAACAAACGCTTGAATTTTTCTGGGTTTTTTACCGTGATTTTAAAGAAAAATTGTGAGGTGATTTCGGTGGCAACTATAAGAATTTACGGTCAAAATGTTGCGGAGATAGTTTTCGTGGCCACCAAGAAACGATATCGAGGACGGGGAATGTGTCGTTTGTTACTGAATGAGCTTGAGAAACAATTGGTTGCCTTAGGTGTTGGGAGCTTGATTTTGCATTCCTCTGAGGATGCAATAAATACTTGGACAAAATCGTTTGGTTTTGTTAGAATAACTCCTAAAGATAAAAGTCAATTTATCGATCATACTTTTTTAGAATTTGAGAACACTATCATGTGTCTTAAATCTTTGAAATGA 1548 0.3411 MASLSHPREINIKGGCSIKQPSVTPQPQAATTKSISSTTLLSKKRPRNFENFDKSTFDKDYETSTSNSVEKSIMTTTSTSKKNEKHVSESKSETKVEKVLNMRVRERSTLVSWLIRNHVLSQGTKVSCRGRNNIVKRGRLSYDGIVCDCCQVIFSITKFEAHADCTRHRPSTSILLEDGRSLLKCQRDALNSRDQNKDHFVVEENNDSVCLVCGLGGNIILCDRCPSSFHLCCLGLDQVPENDWFCPSCCCKVCRRPKCKQECKDHMDNIVLVCAQCEKKYHFGCLKFINFGLWYVESNKKKKDWFCSLACGNIFLDLMKLLGKPIEVADNITWTLEKNVSSVINDDGQDFSSNKFSQKKSKLNAALGLLYASFNPIIDVLSGRDLIKDLIFSRESKNKRLNFSGFFTVILKKNCEVISVATIRIYGQNVAEIVFVATKKRYRGRGMCRLLLNELEKQLVALGVGSLILHSSEDAINTWTKSFGFVRITPKDKSQFIDHTFLEFENTIMCLKSLK 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06327 515 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 271 IPR013083 -
Vifa1g06327 515 SUPERFAMILY FYVE/PHD zinc finger 196 252 IPR011011 -
Vifa1g06327 515 MobiDBLite consensus disorder prediction 17 45 - -
Vifa1g06327 515 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 394 498 IPR016181 -
Vifa1g06327 515 Gene3D - 388 503 - -
Vifa1g06327 515 Pfam Tify domain binding domain 138 188 IPR032308 -
Vifa1g06327 515 MobiDBLite consensus disorder prediction 46 60 - -
Vifa1g06327 515 MobiDBLite consensus disorder prediction 61 81 - -
Vifa1g06327 515 PANTHER PHD FINGER PROTEIN 12 51 514 IPR042163 GO:0003714|GO:0045892
Vifa1g06327 515 SMART PHD_3 251 311 IPR001965 -
Vifa1g06327 515 SMART PHD_3 209 250 IPR001965 -
Vifa1g06327 515 CDD NAT_SF 409 470 - -
Vifa1g06327 515 ProSiteProfiles Zinc finger PHD-type profile. 207 252 IPR019787 -
Vifa1g06327 515 Pfam Acetyltransferase (GNAT) family 402 485 IPR000182 GO:0016747
Vifa1g06327 515 MobiDBLite consensus disorder prediction 1 94 - -
Vifa1g06327 515 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 369 507 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06327 Vifa-Chr1 986779553 986781100 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06327 91 457 PHD Transcription Factor Family AT5G58610 39.737 8.99e-83 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Vifa1g06327 Acetyltransf_1 6.3e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06327 - - tpra:123894286 580.482