Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06326 ATGATGACGCTAACAATATCTCTAGTTGTGGCTATCACACTAATCCTCACTTCATTCATATATGCTTTTTACCAAACACTATGCCTCAAAAATCCTGCCTTCACAAATTGGCCTTTTATTGGCATGTTACCACAATTTATTTGGAACATGTCACATATTCATGAGTATTCAACACAAATGTTGAAATCAAAAGGTGGCACAGTTGAATTTATAGGACCTTGGTTTACCAACATGAAGGGAATAATCACAACTGATCCAATGAATGTTCACCACATCATGAGCAAGAGATTCGACAACTTCGTAAAAGGTAATTTGTTTCGTGAAATGTTTCAACCTTTTGGTGAAGGAATTTTCACTACCGATTCACATAAATGGAAATATAATAGGAACCTTGTCCAACATCTATTTAAACAAAAAAGCTTTGAAACTTTTCAAGAGAAAATCATTCACAACAAAGTTGAAAAATCATTGATTCCTTTATTGAATCATGTTCAACAACAAAATGAGTCATTAGTCGATTTACAAGATGTCTTCAATCGTTTCACCTTTGACAATATATGTTTAATAGTTCTCGGACATGATCCGAATTGTCTTTCATCTGATTTTCCCGAAGTTGCTTACGAGAAGGCTTTTAACCAAGCAGAAGAATCCATCTTCTATAGACACACTATGCCCAGTTATATTTGGAAGTTGAAAAGATGGCTTCAAATAGGTGAAGAGAAAAAAATGATCGAAGCATGCAAAATATTCGATAAATTTCTATTTTCATGTATAGCATCAAAGCGCGAAGAGGTTAGAAAAAATTTCAACACAAAAGAAATCAATATTGAAACCGATGAAGCTCATCGTATTGATTTTCTAACAATGATGATCAGAGAAGAAGAAGAAACAAAGTGTAGTAAAAGTGAATTGCGTGGTGACAAGTTTCTAAGAGACGTTGTATTCAATCTCTTTGTAGCGGGAAGAGATACTATAACTTCGGCGCTTACATGGTTCTTTTATCTAGTTGCTACACACCCTTTAGTGGAAGCAAAGATTCTTGAAGAGATAAAAGAAAATTTTGGACATAAAGAGAAGCCTTGGGTGTTAAGTGTTGATGAGGTGAAAAAACTTGTTTATCTTCATGGAGCTATATGTGAGGCATTGAGGCTATTTCCGCCGGTACCTTTTGAGAGAAAGGAAACAATAAAATCTGATATACTTCCTAGTGGTCATCATGTTTATCCAAAAACAATTATATTGTTTTCTGTGTATGCAATGGGAAGGTTTGAAGATATTTGGGGAGAAGATTGCTTGGAGTTCAAGCCAGAAAGGTGGATTTCTGAGAGAGGAGGTATTGTTTATGAGCCATCTTATAAGTTCTTTAGTTTTAATGCTGGACCTAGGACTTGTTTGGGAAAAGATTTGGCTTTCATTCAAATTAAGATGGTGGCTGCTTCTATTTTGTGGAACTATTGTGTCCATGTTGTGGAAGGTACTTGTGTCACCCCTAATCTTTCAATTGTACTTCTCATGAAACATGGTCTTAAGGTTAAAATAAGCAAAAGGGGAATTTAA 1557 0.3494 MMTLTISLVVAITLILTSFIYAFYQTLCLKNPAFTNWPFIGMLPQFIWNMSHIHEYSTQMLKSKGGTVEFIGPWFTNMKGIITTDPMNVHHIMSKRFDNFVKGNLFREMFQPFGEGIFTTDSHKWKYNRNLVQHLFKQKSFETFQEKIIHNKVEKSLIPLLNHVQQQNESLVDLQDVFNRFTFDNICLIVLGHDPNCLSSDFPEVAYEKAFNQAEESIFYRHTMPSYIWKLKRWLQIGEEKKMIEACKIFDKFLFSCIASKREEVRKNFNTKEINIETDEAHRIDFLTMMIREEEETKCSKSELRGDKFLRDVVFNLFVAGRDTITSALTWFFYLVATHPLVEAKILEEIKENFGHKEKPWVLSVDEVKKLVYLHGAICEALRLFPPVPFERKETIKSDILPSGHHVYPKTIILFSVYAMGRFEDIWGEDCLEFKPERWISERGGIVYEPSYKFFSFNAGPRTCLGKDLAFIQIKMVAASILWNYCVHVVEGTCVTPNLSIVLLMKHGLKVKISKRGI 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06326 518 PANTHER CYTOCHROME P450 21 511 - -
Vifa1g06326 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Vifa1g06326 518 CDD CYP86A 69 509 - -
Vifa1g06326 518 Gene3D Cytochrome P450 28 517 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 Pfam Cytochrome P450 33 511 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS E-class P450 group I signature 329 355 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS E-class P450 group I signature 309 326 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 SUPERFAMILY Cytochrome P450 34 516 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS P450 superfamily signature 320 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06326 518 PRINTS P450 superfamily signature 464 475 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06326 Vifa-Chr1 986776039 986777595 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06326 2 517 Cytochrome P450 AT2G23180 44.168 7.80e-162 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06326 - - tpra:123904061 862.833