Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06325 ATGAAGCTTCGCGTTTCAATCTTCTTCATCTTCATCATCTCCACCTCCATCGCCCAATCCCAACGACTCTCTCTTCTCCCCAACGAAAACGGCTTCTCTCCTTCCGCTCTCGTTCTTCCTCCATCACCAAAACCTGCTACGGCACTGGTTGCTGCCCTAGACGGTACTGTTTACCTCGTTGAAAGTGCTTCTGGAAGGGTAATTTGGTCTTTTTCAACTGGATCCCCAATCTATCATTCCTCCGCCAGTACTCCGTCTTCTGGACTCATCGAATGTGGTGATGACTGGGAATTGATCTTTCATGATACCCACTTTGGCAAAACGAGGCTCAAGGAATCTGTTGCTGACTATGTTGCTGTTACACCTATTGTGTCTAAAGATGGAGCTGTTATACTTGGATCCAAAAGGAGCACTGTATTTGAAGTCGATGCCAAAACTGGGAAGCTCCTTAGAAGCTACGGTGCTGCTGATTTTCATAATGCTTCTACTACTGCAGTCTGGAGTGCTGACAAGGACAGACACAAAGTTAGTACTGTTGTCGGTGCAAATAATAACCAGCTTGCTGATCCAGGAAACCTCAGTTTACCAGAGTTCTTGCTCCAGATAGTTAGGACCGATTATTTTTTACAATCTGTGGGTCCTGGTTCGGGAATAGTGTTGTGGACTATGTCAGTAGCTGAATTTGAGGCTGTATTATTTTGCAAACATAATGAAAATCCTACCTTCAAGGCTTCCGCTTCCGCTTCCCTTGATGCAGAAGGTGAGTATGCTTTTGATGTTGACAGTGGCTTGGATTTTGATATGCCGTATGCGTGTCCAGACAGTAAACTCAGAGAAGTCTATCGCCAGCGAAAGAATTTTCTGTTTGAACCTGCTAACTTTGAAAGATTATCTGATGTTAGTTCTTATCAACAACATGATATGCTCCCCATGCCGGTTTCACATCTGATGCTTCCATCACAACCTAAGAATGAAAAATTCCTCCCTGGTCATAATGTTGTGCTCTCTCAGCCCCATATGGAGATTGCTGCACCAAGGGAAATTGATCTGAACAGGGTGATTGAATTGTCAATGACATTATTGGCTGTATTATCTGTGGTCTTTCTTCTGATATTTTACCAAAATCGATCTACAAATAAAGCTACATCGAAGGTCCAAATCAGTGGATTAGATTTGAAAAGCCCACCTTCTAAGAAAAAGAGAGCACGTAAGTCAGGAAAAAACAATGTCATTGTTGAAAAACAGGATAATCATCTGTATTCAGTTGAGGAGAATATACGAATACATAAGGCAGCCGAAAATGAAGCACGGTTGCTGTATAACAAAGTTAACGGACGCAGGATCGGTAAACTGCATGTATCTAATAAAGAAATCGCAAAGGGAAGTAATGGTACCATTGTTCTTGAGGGGATATATGAAGGTCGATCAGTTGCTATCAAACGTCTTGTTCAGGCTCATCATGATGTAGCTCATAAAGAAATCCAAAATCTCATTGCTTCTGACTTTCATCCAAATATTGTCCGATGGTACGGCGTGGAATATGATCAAGATTTTGTTTATCTTGCTCTGGAACGTTGTGCATGCAACTTGGATGATTTAATTAGTATTTATTCAGATATGTCAGAAAATCCAGTGCTAAACAAAGATCGAGCTTTTGAATTTTTCAAGAAGGCCCAGATAGAGACACAGGGGGATGATACACAGTGTCTTTGGAAAACAAATGGTTATCCATCTCCTCTTTTACTAAAGCTGATGAGGGATGTGGTTTCAGGGCTTGTTCATTTGCATGAACTAGGAATAGTACATCGCGATTTGAAACCCCAAAATGTTTTGATAATCAAGGAAAGATTATTATGTGCCAAGCTTTCTGATATGGGGATTAGTAAGCGACTTCTTGAAGATATGTCTTCATTAGGCCATAGTTCTACTGGCTGTGGCAGTTCGGGTTGGCAAGCGCCAGAGCAGCTTCTTCAGGGACGTCAAACACGGGCTGTGGATTTGTTTAGTTTAGGCTGTGTCCTCTTTTTCTGTATGACAGCAGGTAGACATCCATTTGGAGATCGTCTCGAGCGTGATGTCAATATTGTTAAAAATAAAAAAGATCTTTTCTTAGTGGAGTTCTTTCCTGAAGCTGAGGATCTTGTTTCTTGTTTATTAAACCCTGACCCCAATCTAAGGCCAAAGGCGATTGAAGTATTGCATCATCCTCTATTTTGGAATTCTGAGATGAGACTTTCATTTCTTCGTGACGTCAGTGACAGAGTGGAACTTGAAGATAGAGAGACTAATTCTGTTCTTTTAAATGTATTAGAAAGCACAGCTCCAATGGCTTTAGGTACAAAATGGGACGAAAAGATGGAATTGAATTTCCTTGCTAACATTGGTCGTTACAGGCGATATAAATTTGATAGTGTTCGAGACTTGTTGAGGGTCTTGAGAAACAAGCTAAATCATTTTAGAGAATTGCCTCTAGAAATTCAGGAACTGATAGGACCTATTCCAGAAGGATTCAATGAGTACTTTGCAAGTCGATTTCCAAGGCTCTTGATTGAAGTGTACAAAGTTATATGCAATTATTGCAAAGATGATGAATGTTTTCAAAGATATTTTAGAGACATTGATTAA 2625 0.4061 MKLRVSIFFIFIISTSIAQSQRLSLLPNENGFSPSALVLPPSPKPATALVAALDGTVYLVESASGRVIWSFSTGSPIYHSSASTPSSGLIECGDDWELIFHDTHFGKTRLKESVADYVAVTPIVSKDGAVILGSKRSTVFEVDAKTGKLLRSYGAADFHNASTTAVWSADKDRHKVSTVVGANNNQLADPGNLSLPEFLLQIVRTDYFLQSVGPGSGIVLWTMSVAEFEAVLFCKHNENPTFKASASASLDAEGEYAFDVDSGLDFDMPYACPDSKLREVYRQRKNFLFEPANFERLSDVSSYQQHDMLPMPVSHLMLPSQPKNEKFLPGHNVVLSQPHMEIAAPREIDLNRVIELSMTLLAVLSVVFLLIFYQNRSTNKATSKVQISGLDLKSPPSKKKRARKSGKNNVIVEKQDNHLYSVEENIRIHKAAENEARLLYNKVNGRRIGKLHVSNKEIAKGSNGTIVLEGIYEGRSVAIKRLVQAHHDVAHKEIQNLIASDFHPNIVRWYGVEYDQDFVYLALERCACNLDDLISIYSDMSENPVLNKDRAFEFFKKAQIETQGDDTQCLWKTNGYPSPLLLKLMRDVVSGLVHLHELGIVHRDLKPQNVLIIKERLLCAKLSDMGISKRLLEDMSSLGHSSTGCGSSGWQAPEQLLQGRQTRAVDLFSLGCVLFFCMTAGRHPFGDRLERDVNIVKNKKDLFLVEFFPEAEDLVSCLLNPDPNLRPKAIEVLHHPLFWNSEMRLSFLRDVSDRVELEDRETNSVLLNVLESTAPMALGTKWDEKMELNFLANIGRYRRYKFDSVRDLLRVLRNKLNHFRELPLEIQELIGPIPEGFNEYFASRFPRLLIEVYKVICNYCKDDECFQRYFRDID 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06325 874 SMART PGNneu 803 857 - -
Vifa1g06325 874 Gene3D - 31 258 IPR015943 GO:0005515
Vifa1g06325 874 SMART serkin_6 452 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06325 874 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 49 169 IPR011047 -
Vifa1g06325 874 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1 742 874 - -
Vifa1g06325 874 Pfam Ribonuclease 2-5A 744 870 IPR010513 GO:0004540|GO:0006397
Vifa1g06325 874 Pfam Protein kinase domain 455 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06325 874 PANTHER IRE1-RELATED 111 872 IPR045133 GO:0004521|GO:0004674|GO:0030968
Vifa1g06325 874 SMART ire1_9 40 72 IPR018391 -
Vifa1g06325 874 SMART ire1_9 122 154 IPR018391 -
Vifa1g06325 874 FunFam Serine/threonine-protein kinase/endoribonuclease IRE1a 562 740 - -
Vifa1g06325 874 ProSitePatterns Serine/Threonine protein kinases active-site signature. 600 612 IPR008271 GO:0004672|GO:0006468
Vifa1g06325 874 CDD RNase_Ire1 742 870 - -
Vifa1g06325 874 Gene3D KEN domain 741 873 IPR038357 -
Vifa1g06325 874 Gene3D Phosphorylase Kinase; domain 1 439 524 - -
Vifa1g06325 874 ProSiteProfiles KEN domain profile. 741 872 IPR010513 GO:0004540|GO:0006397
Vifa1g06325 874 SUPERFAMILY Protein kinase-like (PK-like) 456 743 IPR011009 -
Vifa1g06325 874 Gene3D Transferase(Phosphotransferase) domain 1 566 740 - -
Vifa1g06325 874 ProSiteProfiles Protein kinase domain profile. 452 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06325 874 FunFam Putative Serine/threonine-protein kinase/endoribonuclease IRE1 444 524 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06325 Vifa-Chr1 986774039 986779046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06325 476 737 MAP Kinase Kinase Kinase AT3G06030 27.068 1.58e-21 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Vifa1g06325 Pkinase 3.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06325 K08852 - gmx:100785363 1071.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06325 1 986774039 986779046 Vifa1g06325 1 986774039 986779046 ECH