Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06324 ATGGTGGCTGTGCCCCTTTTTTCGTTCATAATTATAGTGGTGGTGGCCGCGATTGGAGGGTTGCCGGAGGGGCTTCGTGCGTTGGTGCGTGGAAGCTTCACCGAAACATGGTTGTGTTTAAACCTTCTTATCAACAACGATGGAATTGTCAAGATTGCTGGTTTTAGGTTAGCTTTCTTCTATGATCTTGATCACAAGCACCCAATGACAAGTAGAGTGGTGACTTTATGGTATATGCTTCCGAGCTTCTTCTTGGAGCCATTGAGTATTGGTGTAGAAGTGGACTTTTGGAGTGTTGGCTGCATTCTTGCAGAATTGTTGGTTGGACAACCTATCATGTCTGGTCAAACTGAGGTACCGAAGATAGCGGTGCTTCTAGCAAAGATTAGTTGGAGGAACTAG 402 0.4552 MVAVPLFSFIIIVVVAAIGGLPEGLRALVRGSFTETWLCLNLLINNDGIVKIAGFRLAFFYDLDHKHPMTSRVVTLWYMLPSFFLEPLSIGVEVDFWSVGCILAELLVGQPIMSGQTEVPKIAVLLAKISWRN 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06324 133 SUPERFAMILY Protein kinase-like (PK-like) 41 125 IPR011009 -
Vifa1g06324 133 Pfam Protein kinase domain 41 119 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06324 133 Gene3D Transferase(Phosphotransferase) domain 1 39 132 - -
Vifa1g06324 133 PANTHER CELL DIVISION PROTEIN KINASE 41 122 - -
Vifa1g06324 133 ProSiteProfiles Protein kinase domain profile. 1 133 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06324 Vifa-Chr1 986763422 986770814 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06324 41 118 Core Cell Cycle Gene Families AT5G64960 52.564 5.24e-22 88.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vifa1g06324 Pkinase 3.3e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06324 K08819 - pop:7454586 112.079