LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g06307	ATGGATTCACGTAACAACGCTGTTGATTCTGTATCAGAGGTTCAGAATTCGGTTTCTAGGGTACCTGCGGTACCGGTACGCCACAGTCTTCCTTTAACATCAGGGATTCCGCGTCCTTCGCGGCCTCCCTTATACAGAAATAATCATGGAGCTTCTTCTTCTTCCGCATCCTTTTTGGAACATCGGCATTGTCGAAATAATTATGGAACGAAGAATATTCACCATCAAAATTGTTATGCAGTTAATCGAAAGCATTCATATCAAGATAGAAAATTATGCAGCAAGCAACTGTTTGATGATGGTTCCAAGAATTGTGAGTCGTGTTCTGTAGTATTAGAATCCGACAATTGTATCTTAGTTACATCGAAACGAGATGTTGGTAATCAACCGAAAAATTGCCGTTGTCAGTCAGAGATTAGTTTTTCTCATAGTCCTCAAAATAGTTTACATTCGACCACCTATTCGGAAGCGAAACAAAGTTTCACCAATACTGAAGTCAGTGAGTGTGTTAGTGTTGATGATAATGAGTCCTGCGAAAGCGGAGAAGTTTCGAATTCGTGTGATTTTATTGAAAGTACCAAAACCAGCATCTATAGAGCGAGTACAGTAAGTGATGTTAGCGACGAAAGCAGCACGAGTAGTTTGAGTAGTGCTGTGTATAAACCTCATAAGGCGAATGATATAAGATGGGAAGCGATTCAAGCTGTGCGAGCAAGCGTCGGGGTGTTGGAAATGAGGCATTTTAGGTTGATGAAGAAATTGGGATGTGGAGATATAGGAAATGTATATCTAGCTGAACTGAGTGGCACAGGGACTTGTTTTGCTATGAAACTCATGAATAAAACCAAGCTCGCAAGTCGGAAGAAGCTTGTAAGAGCTCAAACGGAGAGAGAGATATTGCAGTCTTTAGATCACCCTTTTTTACCAACATTATATACGCATTTCGAGACTGAGAGAATCTCTTGCTTGGTAATGGAGTTTTGTCCTGGTGGCGACCTTTATTCAATCAGGCAAAGACAGCCTGGGAAGTATTTCTCGGAGCATGCTGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTACACATGCTTGGAATCATCTATAGAGACCTTAAACCTGAGAATGTATTGGTTAGAGAAGACGGTCATATAATGCTTTCGGATTTCGATCTCTCTTTAAGGTGTACCGTCAGTCCAACTCTCGTGAACTTGTCAAACCCGATCGTTGAAACGAAAAGATCAGGATACTGCATTCAGCCAAGATGTGCAATGCAGCCAGACTGCATCCAACCTGCATGCTTTTCGCCGCGGTTTCTATCCAGTAAATCCAGGAAAGAGAGAAAATTCAGGCCAAAGAATGACATGCATCACCAGGTGACACCTCTCCCTGAGCTAATGGCTGAACCAACAAGTGCGCGATCGATGTCCTTTGTAGGCACGCACGAGTACTTGGCGCCTGAAATTATTAAAGGCGAAGGACACGGAAGTGCTGTGGATTGGTGGACGTTTGGTATATTCTTATACGAACTCTTGTTTGGTCGAACACCGTTCAAAGGCTCTGCAAACCGAGCGACGCTGTTCAATGTAGTCGGGCAGCCTTTAAGGTTTCCAGAATCTCCTACTGTCAGCTTTGCAGCAAGGGATTTGATCAGAGGCTTGCTGGTGAAAGAGCCTCAACACCGTCTTGCCTATAGACGTGGAGCAACCGAAATCAAACAGCATCCGTTTTTTCATAATGTGAACTGGGCGCTGATCCGTTGTGCTAATCCGCCCGAGGTACCGAGAGACACCATGATGATGAAACCAAGTTCAACTGAAAATGAAGTTGGTATGAACCCTTCTAGTAATTATTTAGATGTTGATTTCTTTTGA	1881	0.4317	MDSRNNAVDSVSEVQNSVSRVPAVPVRHSLPLTSGIPRPSRPPLYRNNHGASSSSASFLEHRHCRNNYGTKNIHHQNCYAVNRKHSYQDRKLCSKQLFDDGSKNCESCSVVLESDNCILVTSKRDVGNQPKNCRCQSEISFSHSPQNSLHSTTYSEAKQSFTNTEVSECVSVDDNESCESGEVSNSCDFIESTKTSIYRASTVSDVSDESSTSSLSSAVYKPHKANDIRWEAIQAVRASVGVLEMRHFRLMKKLGCGDIGNVYLAELSGTGTCFAMKLMNKTKLASRKKLVRAQTEREILQSLDHPFLPTLYTHFETERISCLVMEFCPGGDLYSIRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVNLSNPIVETKRSGYCIQPRCAMQPDCIQPACFSPRFLSSKSRKERKFRPKNDMHHQVTPLPELMAEPTSARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRDTMMMKPSSTENEVGMNPSSNYLDVDFF	626

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa1g06307	626	MobiDBLite	consensus disorder prediction	1	20	-	-
	Vifa1g06307	626	CDD	STKc_phototropin_like	246	598	-	-
	Vifa1g06307	626	ProSiteProfiles	Protein kinase domain profile.	248	580	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g06307	626	Pfam	Protein kinase domain	249	401	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g06307	626	Pfam	Protein kinase domain	477	580	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g06307	626	FunFam	serine/threonine-protein kinase D6PK-like	475	598	-	-
	Vifa1g06307	626	Gene3D	Transferase(Phosphotransferase) domain 1	332	399	-	-
	Vifa1g06307	626	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	369	381	IPR008271	GO:0004672\|GO:0006468
	Vifa1g06307	626	Gene3D	Transferase(Phosphotransferase) domain 1	474	598	-	-
	Vifa1g06307	626	FunFam	serine/threonine-protein kinase D6PK-like	332	399	-	-
	Vifa1g06307	626	SMART	serkin_6	248	580	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vifa1g06307	626	MobiDBLite	consensus disorder prediction	1	19	-	-
	Vifa1g06307	626	PANTHER	FLIPPASE KINASE 1-RELATED	103	604	-	-
	Vifa1g06307	626	Gene3D	Phosphorylase Kinase; domain 1	246	331	-	-
	Vifa1g06307	626	FunFam	Serine/threonine-protein kinase D6PK-like	246	331	-	-
	Vifa1g06307	626	SUPERFAMILY	Protein kinase-like (PK-like)	226	603	IPR011009	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g06307	Vifa-Chr1	985163395	985165382	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g06307	151	626	AGC Kinase Gene Family	AT5G47750	68.737	0.0	681

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vifa1g06307		Pkinase	6.7e-37	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g06307	K08286		-	gmx:100810909	926.776