Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06305 ATGGAGAGAGAGATTGTGGAAAACCTTTGGAATGGTGATAGTGAAGCTCAAGTTCAAGCAGCAATGAAAGTTAGTAGATTGTGTAGTAAGCAAAAGCACAATTTGGCAGAAAGTGGAGTTATGGTTCCTCTGGTTTCCATGCTTCATTCTGAAAACTTTGAAGCTATAGAAGCTTCTCTTTATGCTCTTCTAAACCTTTCCTTTGGCAGTGAAAGAAACAAGATTCGGATCGTCAGGTACGGAGTTTTGCCAATTTTACTGAACCTCCTCCACTGCGAAAGCCAGACAGTGATACAATTGTCATTAGCAGCCATGTTAACACTTTCTTCGTGCAAGAGAAATAAGATAGCAATAGCTTCATCTGGCGCAGTTCAAATTTTGGTTGAATTTATCAACAGTAGTAACACTCACACTCAGTCTCAACTAGATGCTATAGCTACTCTCTATAACCTCACAACCTGTCAAGAGATTATTCCATTGATTGAATCTTCTGGTGTTATACTCTCCTTGCTTGAACTGATCCATGGGTCCGTAAAATCGTCTTCATCGGTTGAGAAAGCAATAGAGTTGCTAGAAAAGATTGTTTCTTCATCAGAGAGTGCACTTTGTGCGACTGCTAGTACCGGAGGAGCGATTCGGATACTGGTTGAGACTATTGAAGATGGATCATCACTAGGAAAAGAGCATGCAGTTGGTATACTTCTCCTTATATGTCAAAGTAGCAGAGAAAAATATAGAGTACTGATTTTGACAGACGGGGTCATGCCAGGATTGCTTCAGTTAAGTGCCGCTGGCACGTGCAGAGCCAAATCCATGGCTAGAGAATTGCTGTTGCTTCTGAGAGACTGCTCGAGTTGTAGCTCGAGACATAGACAAATTAATCATGAACTTATAGAACAGATAATGGACGAGATTGATGCAGAAGGAGAGAAATTGGGACATACTACTTTGAGATTGGTAGAGGAGATGATTGCAAAGCTCAATACATAA 990 0.4081 MEREIVENLWNGDSEAQVQAAMKVSRLCSKQKHNLAESGVMVPLVSMLHSENFEAIEASLYALLNLSFGSERNKIRIVRYGVLPILLNLLHCESQTVIQLSLAAMLTLSSCKRNKIAIASSGAVQILVEFINSSNTHTQSQLDAIATLYNLTTCQEIIPLIESSGVILSLLELIHGSVKSSSSVEKAIELLEKIVSSSESALCATASTGGAIRILVETIEDGSSLGKEHAVGILLLICQSSREKYRVLILTDGVMPGLLQLSAAGTCRAKSMARELLLLLRDCSSCSSRHRQINHELIEQIMDEIDAEGEKLGHTTLRLVEEMIAKLNT 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06305 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Vifa1g06305 329 Pfam Kinesin-associated protein (KAP) 22 161 - -
Vifa1g06305 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Vifa1g06305 329 SMART arm_5 111 153 IPR000225 GO:0005515
Vifa1g06305 329 SMART arm_5 28 68 IPR000225 GO:0005515
Vifa1g06305 329 SMART arm_5 154 196 IPR000225 GO:0005515
Vifa1g06305 329 SMART arm_5 70 110 IPR000225 GO:0005515
Vifa1g06305 329 SUPERFAMILY ARM repeat 5 311 IPR016024 -
Vifa1g06305 329 Gene3D - 3 325 IPR011989 -
Vifa1g06305 329 FunFam U-box domain-containing protein 4 3 198 - -
Vifa1g06305 329 PANTHER U BOX DOMAIN-CONTAINING 3 285 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06305 4 282 U-box Gene Family AT3G54790 32.509 6.29e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06305 - - gmx:100778534 462.996