Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06300 ATGACACGAGCGCTAAGAATCCTCACTGAAAACATCAACGCCGCCTCCGTAACAGCACCGCCGCCAGAAGCCGTGGCGTTGGAGTCAGACTTCGTCGTGATTCTCGCAGCCTTGCTCTGTGCCTTGATATGCGTTGTCGGACTCATCGCCGTAGCCCGATGCGCCTGGCTCCGACGAGACTCCGGCACCGGAAACTCTCCTCAGCAAGCTTTAGCTAACAAAGGACTCAAGAAAAAAGTTCTTCAATCGCTTCCGAAATTCGCTTACGTCGATAGCAACCCTACGAAATGGTTGGCGACAACTGAATGCGCGATTTGTCTCTCTGATTTCGCCGCCGGCGACGAGATCCGTGTGCTACCGCAGTGTGGACACGGATTCCACGTTGCTTGCATAGACACATGGCTTGGGTCCCACTCTTCTTGCCCTTCCTGTAGACAAATTCTGGCGGTGACAAGGTGTCAGAAGTGTGGCCGGTTTCCGGCAACCGGAGCTGAAGCTACCGCTGTTGCCGTTAATGAATTGGAGTCGAAATCTGCAGAAGATAGCAATGTTGGTGCTAATAGTAATAATAATTGTAACGGGGGTGTTAGTAGTAGTAATAATTCTGGAAATCACAGCCACAGTGTAAACAGTGGGTTCTTGCCTTAA 648 0.5123 MTRALRILTENINAASVTAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRDSGTGNSPQQALANKGLKKKVLQSLPKFAYVDSNPTKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAEATAVAVNELESKSAEDSNVGANSNNNCNGGVSSSNNSGNHSHSVNSGFLP 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06300 215 CDD RING-H2_EL5-like 102 145 - -
Vifa1g06300 215 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 150 IPR013083 -
Vifa1g06300 215 MobiDBLite consensus disorder prediction 196 215 - -
Vifa1g06300 215 Pfam Ring finger domain 102 145 IPR001841 -
Vifa1g06300 215 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Vifa1g06300 215 FunFam E3 ubiquitin-protein ligase ATL6 65 151 - -
Vifa1g06300 215 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 23 157 - -
Vifa1g06300 215 SMART ring_2 103 144 IPR001841 -
Vifa1g06300 215 SUPERFAMILY RING/U-box 81 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06300 Vifa-Chr1 984880253 984880900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06300 6 156 C3H Transcription Factor Family AT1G76410 63.694 2.36e-64 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06300 - - gmx:100787383 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06300 1 984880253 984880900 Vifa1g06300 1 984880253 984880900 ECH
Vifa1g06300 1 984880253 984880900 Vifa2g03142 2 903964777 903965481 ECH