Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06300 | ATGACACGAGCGCTAAGAATCCTCACTGAAAACATCAACGCCGCCTCCGTAACAGCACCGCCGCCAGAAGCCGTGGCGTTGGAGTCAGACTTCGTCGTGATTCTCGCAGCCTTGCTCTGTGCCTTGATATGCGTTGTCGGACTCATCGCCGTAGCCCGATGCGCCTGGCTCCGACGAGACTCCGGCACCGGAAACTCTCCTCAGCAAGCTTTAGCTAACAAAGGACTCAAGAAAAAAGTTCTTCAATCGCTTCCGAAATTCGCTTACGTCGATAGCAACCCTACGAAATGGTTGGCGACAACTGAATGCGCGATTTGTCTCTCTGATTTCGCCGCCGGCGACGAGATCCGTGTGCTACCGCAGTGTGGACACGGATTCCACGTTGCTTGCATAGACACATGGCTTGGGTCCCACTCTTCTTGCCCTTCCTGTAGACAAATTCTGGCGGTGACAAGGTGTCAGAAGTGTGGCCGGTTTCCGGCAACCGGAGCTGAAGCTACCGCTGTTGCCGTTAATGAATTGGAGTCGAAATCTGCAGAAGATAGCAATGTTGGTGCTAATAGTAATAATAATTGTAACGGGGGTGTTAGTAGTAGTAATAATTCTGGAAATCACAGCCACAGTGTAAACAGTGGGTTCTTGCCTTAA | 648 | 0.5123 | MTRALRILTENINAASVTAPPPEAVALESDFVVILAALLCALICVVGLIAVARCAWLRRDSGTGNSPQQALANKGLKKKVLQSLPKFAYVDSNPTKWLATTECAICLSDFAAGDEIRVLPQCGHGFHVACIDTWLGSHSSCPSCRQILAVTRCQKCGRFPATGAEATAVAVNELESKSAEDSNVGANSNNNCNGGVSSSNNSGNHSHSVNSGFLP | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06300 | 215 | CDD | RING-H2_EL5-like | 102 | 145 | - | - | |
Vifa1g06300 | 215 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 150 | IPR013083 | - | |
Vifa1g06300 | 215 | MobiDBLite | consensus disorder prediction | 196 | 215 | - | - | |
Vifa1g06300 | 215 | Pfam | Ring finger domain | 102 | 145 | IPR001841 | - | |
Vifa1g06300 | 215 | ProSiteProfiles | Zinc finger RING-type profile. | 103 | 145 | IPR001841 | - | |
Vifa1g06300 | 215 | FunFam | E3 ubiquitin-protein ligase ATL6 | 65 | 151 | - | - | |
Vifa1g06300 | 215 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 23 | 157 | - | - | |
Vifa1g06300 | 215 | SMART | ring_2 | 103 | 144 | IPR001841 | - | |
Vifa1g06300 | 215 | SUPERFAMILY | RING/U-box | 81 | 150 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06300 | Vifa-Chr1 | 984880253 | 984880900 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06300 | 6 | 156 | C3H Transcription Factor Family | AT1G76410 | 63.694 | 2.36e-64 | 196 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06300 | - | - | gmx:100787383 | 313.923 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vifa1g06300 | 1 | 984880253 | 984880900 | Vifa1g06300 | 1 | 984880253 | 984880900 | ECH | |
Vifa1g06300 | 1 | 984880253 | 984880900 | Vifa2g03142 | 2 | 903964777 | 903965481 | ECH |