Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g06298 | ATGGAATCACCCGGAAAAGACCATTTGGTTGGAGGAGGAGAATCTAACGACGTTGGTAGAACCTTCAGTCACAGAGATGAACAAGAACATGAAGAACACGAACAACAACACCATAACTCTCAACCCCTTACCGGCGATGGTGCCAGTCCTGGAAAGATATTTATAGGTGGATTAGCAAGAGAAACAACCATTGCTCAATTTATCAAGCACTTTGGTAAATACGGTGAGATTACGGATTCGGTTATCATGAAGGATAGGAAAACTGGCCAGCCTCGTGGTTTTGGGTTTATTACTTATGCCGACCCGGTGGTTGTTGACAAAGTCATTGAAGATCTTCATGTCATAAATGGCAAGCAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGGGACTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGAGACCACTCTACCAATCGTTCTCGTGGCTTTGGGTTCGTCACCTTTGACACAGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATCGAGTTTGCTGGTACTCAGGTGGAAATCAAGAAGGCTGAACCGAAGAAGTCTAACCCACCGCCTCCATCATCCAAGCGATACAATGACTCAAGGTCTTCATACGGCAGTGGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGCGGCTTTGGCGTTGGGAGTGGTTACAGCAGGTCAGGCAGTGTATATGGTGGCAGGGGAGGTGCATATGGTGGCTATGGAAGTGAATTTGCTGGATACGGTGGATATGCCGGAGCAATGGGAGGACCCTACAGAGGCGATCCTTCCTTGGGCTATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGTTATGGTCTTAGTGGGTACGGTGGACCTGGTGAGAGTTATGGGGCTTATGGTGGTGCCAGTGCGGGCGCTGCTGCTAGTGGAGGTGGTTCTTCCGGCACTGCTGCCTATCAAAGTGGCTATGATGCCAGCCTTGGGGGAGGATATGGAGGAGGAGCTAGTGGAGGCTCCTTCTATGGAAGCAGGGGAGGCTATGGTGCTGGTCGATATCATCCGTATGGAAGATAG | 1167 | 0.4799 | MESPGKDHLVGGGESNDVGRTFSHRDEQEHEEHEQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPVVVDKVIEDLHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKSNPPPPSSKRYNDSRSSYGSGGGYGDAYDGFGGGFGVGSGYSRSGSVYGGRGGAYGGYGSEFAGYGGYAGAMGGPYRGDPSLGYAGRYGGSFSRGYGLSGYGGPGESYGAYGGASAGAAASGGGSSGTAAYQSGYDASLGGGYGGGASGGSFYGSRGGYGAGRYHPYGR | 388 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g06298 | 388 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 51 | 127 | IPR000504 | GO:0003723 | |
Vifa1g06298 | 388 | MobiDBLite | consensus disorder prediction | 19 | 39 | - | - | |
Vifa1g06298 | 388 | PANTHER | RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN | 25 | 388 | - | - | |
Vifa1g06298 | 388 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 139 | 217 | IPR000504 | GO:0003723 | |
Vifa1g06298 | 388 | MobiDBLite | consensus disorder prediction | 1 | 52 | - | - | |
Vifa1g06298 | 388 | SUPERFAMILY | RNA-binding domain, RBD | 41 | 129 | IPR035979 | GO:0003676 | |
Vifa1g06298 | 388 | SMART | rrm1_1 | 52 | 123 | IPR000504 | GO:0003723 | |
Vifa1g06298 | 388 | SMART | rrm1_1 | 140 | 213 | IPR000504 | GO:0003723 | |
Vifa1g06298 | 388 | MobiDBLite | consensus disorder prediction | 210 | 237 | - | - | |
Vifa1g06298 | 388 | SUPERFAMILY | RNA-binding domain, RBD | 135 | 245 | IPR035979 | GO:0003676 | |
Vifa1g06298 | 388 | Gene3D | - | 19 | 134 | IPR012677 | - | |
Vifa1g06298 | 388 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 132 | 254 | - | - | |
Vifa1g06298 | 388 | Gene3D | - | 139 | 222 | IPR012677 | - | |
Vifa1g06298 | 388 | FunFam | Heterogeneous nuclear ribonucleoprotein 1 | 50 | 131 | - | - | |
Vifa1g06298 | 388 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 53 | 113 | IPR000504 | GO:0003723 | |
Vifa1g06298 | 388 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 141 | 210 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa1g06298 | Vifa-Chr1 | 984616724 | 984619822 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g06298 | 51 | 207 | Eukaryotic Initiation Factors Gene Family | AT1G71770 | 27.746 | 3.35e-11 | 63.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g06298 | K12741 | - | gmx:100793209 | 411.379 |