Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06298 ATGGAATCACCCGGAAAAGACCATTTGGTTGGAGGAGGAGAATCTAACGACGTTGGTAGAACCTTCAGTCACAGAGATGAACAAGAACATGAAGAACACGAACAACAACACCATAACTCTCAACCCCTTACCGGCGATGGTGCCAGTCCTGGAAAGATATTTATAGGTGGATTAGCAAGAGAAACAACCATTGCTCAATTTATCAAGCACTTTGGTAAATACGGTGAGATTACGGATTCGGTTATCATGAAGGATAGGAAAACTGGCCAGCCTCGTGGTTTTGGGTTTATTACTTATGCCGACCCGGTGGTTGTTGACAAAGTCATTGAAGATCTTCATGTCATAAATGGCAAGCAAGTTGAGATTAAGCGGACTATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGTATTCCTTCAAATGTGACTGAAGATGAATTTAGGGACTTTTTCACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGAGACCACTCTACCAATCGTTCTCGTGGCTTTGGGTTCGTCACCTTTGACACAGAGGAAGCTGTTGATGATCTTCTATCTATGGGGAACAAGATCGAGTTTGCTGGTACTCAGGTGGAAATCAAGAAGGCTGAACCGAAGAAGTCTAACCCACCGCCTCCATCATCCAAGCGATACAATGACTCAAGGTCTTCATACGGCAGTGGTGGTGGGTATGGAGATGCTTATGATGGATTTGGTGGCGGCTTTGGCGTTGGGAGTGGTTACAGCAGGTCAGGCAGTGTATATGGTGGCAGGGGAGGTGCATATGGTGGCTATGGAAGTGAATTTGCTGGATACGGTGGATATGCCGGAGCAATGGGAGGACCCTACAGAGGCGATCCTTCCTTGGGCTATGCAGGTCGTTATGGTGGAAGCTTTAGCAGAGGTTATGGTCTTAGTGGGTACGGTGGACCTGGTGAGAGTTATGGGGCTTATGGTGGTGCCAGTGCGGGCGCTGCTGCTAGTGGAGGTGGTTCTTCCGGCACTGCTGCCTATCAAAGTGGCTATGATGCCAGCCTTGGGGGAGGATATGGAGGAGGAGCTAGTGGAGGCTCCTTCTATGGAAGCAGGGGAGGCTATGGTGCTGGTCGATATCATCCGTATGGAAGATAG 1167 0.4799 MESPGKDHLVGGGESNDVGRTFSHRDEQEHEEHEQQHHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPVVVDKVIEDLHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSMGNKIEFAGTQVEIKKAEPKKSNPPPPSSKRYNDSRSSYGSGGGYGDAYDGFGGGFGVGSGYSRSGSVYGGRGGAYGGYGSEFAGYGGYAGAMGGPYRGDPSLGYAGRYGGSFSRGYGLSGYGGPGESYGAYGGASAGAAASGGGSSGTAAYQSGYDASLGGGYGGGASGGSFYGSRGGYGAGRYHPYGR 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06298 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 51 127 IPR000504 GO:0003723
Vifa1g06298 388 MobiDBLite consensus disorder prediction 19 39 - -
Vifa1g06298 388 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 25 388 - -
Vifa1g06298 388 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 217 IPR000504 GO:0003723
Vifa1g06298 388 MobiDBLite consensus disorder prediction 1 52 - -
Vifa1g06298 388 SUPERFAMILY RNA-binding domain, RBD 41 129 IPR035979 GO:0003676
Vifa1g06298 388 SMART rrm1_1 52 123 IPR000504 GO:0003723
Vifa1g06298 388 SMART rrm1_1 140 213 IPR000504 GO:0003723
Vifa1g06298 388 MobiDBLite consensus disorder prediction 210 237 - -
Vifa1g06298 388 SUPERFAMILY RNA-binding domain, RBD 135 245 IPR035979 GO:0003676
Vifa1g06298 388 Gene3D - 19 134 IPR012677 -
Vifa1g06298 388 FunFam Heterogeneous nuclear ribonucleoprotein 1 132 254 - -
Vifa1g06298 388 Gene3D - 139 222 IPR012677 -
Vifa1g06298 388 FunFam Heterogeneous nuclear ribonucleoprotein 1 50 131 - -
Vifa1g06298 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 53 113 IPR000504 GO:0003723
Vifa1g06298 388 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 210 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06298 Vifa-Chr1 984616724 984619822 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06298 51 207 Eukaryotic Initiation Factors Gene Family AT1G71770 27.746 3.35e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06298 K12741 - gmx:100793209 411.379