Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06293 ATGATTGTTTTTATATTTATTTTTATTTTGTATAGGGCAATAAATTGGACTCAACTAGCTTTTCGAAAGGCCAAAGAAGTTCCAACAAAATGGGTGCATTCTTTGACTATTGAGCAAAGGAATAAATGGAACTTCTTGGAACATAACTTCTTTACATTCAAGAAAAGTAACAGGATCATGGCGGCCATTGAAGGAAGAGTCTCCGCGGCCATTGAAGGAAGAATCCCTGCGGCAATTGAAGGAAGAATCCCCGAGGAATTGACGGCAAGGTATTATGCCCTTTGCACCATTGGAGGAATGCTCAGTGCTGGTACCACTCACCTTGTCACCACTCCTCTTGACGTTTTGAAAGTTAACATGCAGGTTCACCCTATTAAGTATCACAGTATTTCGTCGTGCTTTACTACTTTATTGAGGGAACAAGGGCCTTCTGTCCTTTGGAAAGGTTGGACAGGAAAGTTCTTTGGATACGGTGCTCAAGGAGGGTGTAGATTCGGTCTCTATGAATATTTCAAGGGTGTTTACTCGAATGTATTGGTAGACCAGCACAGGAGTCTTGTGTTCTTTCTTAGTAGTGCATCTGCTGAAGTATTTGCCAATTTAGCCTTATGTCCATTTGAAGCTGTTAAAGTCAGGGTTCAAGCACAACCTAGTTTTGCTAAGGGCATGTTAGACGGCTTTCCGAAGGTATATGCATCAGAAGGCGCACGAGGATTCTACCGTGGACTTGTTCCACTTTTGGGTCGAAACATTCCATTTTCCATGGTTATGTTCTCAACGTTCGAGCATTCTGTTGATTTTTTGTATCGTAATGTTGTCAAAAGAAAAAAGGAGGAATGTTCAAAAGCTCAACAACTTGGTGTGACATGTTTAGCTGGATATACCGCTGGATCTGTTGGTAGTTTCATTTCTAACCCCGCTGACAATATAGTAGCTTCTCTTTATAACAGAAAAGCTGATAATCTTATGCTGGCTATCAGAAAAATTGGACTAGCCAATTTATTTACCAGGAGCCTTCCTATTAGAATGTTGCTGGTTGGTCCTTCGATAACTATGCAATGGTTTTTCTACGATACAATCAAAGTTTTAGGTGGACTGCCAACTAGTGGTGAAGTTGCAGCTGACTTAGGAGACGGGACAGGCTAG 1146 0.4127 MIVFIFIFILYRAINWTQLAFRKAKEVPTKWVHSLTIEQRNKWNFLEHNFFTFKKSNRIMAAIEGRVSAAIEGRIPAAIEGRIPEELTARYYALCTIGGMLSAGTTHLVTTPLDVLKVNMQVHPIKYHSISSCFTTLLREQGPSVLWKGWTGKFFGYGAQGGCRFGLYEYFKGVYSNVLVDQHRSLVFFLSSASAEVFANLALCPFEAVKVRVQAQPSFAKGMLDGFPKVYASEGARGFYRGLVPLLGRNIPFSMVMFSTFEHSVDFLYRNVVKRKKEECSKAQQLGVTCLAGYTAGSVGSFISNPADNIVASLYNRKADNLMLAIRKIGLANLFTRSLPIRMLLVGPSITMQWFFYDTIKVLGGLPTSGEVAADLGDGTG 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06293 381 Gene3D Mitochondrial carrier domain 93 364 IPR023395 -
Vifa1g06293 381 SUPERFAMILY Mitochondrial carrier 92 359 IPR023395 -
Vifa1g06293 381 Pfam Mitochondrial carrier protein 189 271 IPR018108 -
Vifa1g06293 381 Pfam Mitochondrial carrier protein 96 176 IPR018108 -
Vifa1g06293 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 183 267 IPR018108 -
Vifa1g06293 381 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 79 373 IPR044677 GO:0005315|GO:1990547
Vifa1g06293 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 90 174 IPR018108 -
Vifa1g06293 381 ProSiteProfiles Solute carrier (Solcar) repeat profile. 284 363 IPR018108 -
Vifa1g06293 381 FunFam Mitochondrial phosphate carrier protein 1, mitochondrial 93 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06293 Vifa-Chr1 983633173 983638285 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06293 79 372 Chloroplast and Mitochondria Gene Families AT2G17270 67.119 9.85e-155 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06293 K15102 - gmx:100788561 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06293 1 983633173 983638285 Vifa1g06293 1 983633173 983638285 ECH