Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06283 ATGCATTTCAAAACAAAAACTTCTGCTGCCCTACTTGATATCAAGATTGATCGAGAAATATTGGATTCAGTTACAGTTGCCCTTAAAGAATATTTTCGCAATGACGTCTCATTAGTCTTGTTGTTGGATTGGTACTGCTGCTATTGGCTCCTATTATTAGCAGTTCAGCATCTGATTGCAGAAGTCAGTGAAATTATGACTAATGATACTGTAGATAAGGCTGATTTGTGGAAAAACAAACTCATTGATCAGTCATTGGAGCTTTTAGATTATTTACCTCAAGCAATTCAAGACATTTGCTTCTTGAAAGAGATCCACATGGAAATGTTCAAGTACCTAAAGTTGCATATCATTATATTTTGTGTTCATTTGTCTTCTTTATCCAATTTTGAATCAGTTGCAGACTGTGATACCAGAGATTTTACTGATCAAAAAAGGGAGGACATGTTGGTTTCCGATTTCGTTCGACTTTGCTTTAAATATGAAGGTTCTGCAGTTCAGTGCAGTAATCAAATTGGTGTAAGTAATGGTGACTCTGCATCTGTACCATATTTGAAGGATTGGCATTTTGTGAAGGAGTATCCTGATTACGTACCATACATCACTCCGATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGATAACTTTAGAATGAATACTTATTCCGACAGAGACCAGCAAAATAAGGAAATATGTTGTTCTGACTATCGTTTTGTTTACATGGGAGTAAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTCTGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAGTGCCATCTTGTGTTTGACAGGCATGAATACATTTTCCTAATCGAAATTCATGGTTTTTATAATAAAAGTTGGGCATTGTGGTACAAAAACAATCAGGACATATTCTTTATTCAAATTATTTATGAACTCATTACTATTGGTGTCCACTTTGACCAAATTTTGAACATGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGACTCAAATTATCCTAGTTTTAAAAAGGCTATCTGGTTAGAATGCACACAAGAAGCAGGTGAAATCATATTTGTTCCTAGCGGATGGTTGGATTTGGGAAATGGGAAAACTCTTGATCTTGAACGGTGTTCCCGATCGAAGCTTCGAAAACAATGCATAAAGTATCTTGGACCTCAAGAGAGGGAGAACTATGAATATGTTGTCTGCGATGGAAAAATTATCAACAACCAATCTGGAGATTTTCTTCATACCAAAAAGGATTCTGAAGATGCTAAGTGGATATTTGTAATGAGCACCGAGAAGAAACTTTATGCTGGAAAGAAAAAGAAGGGGTTGTTCCATCATTCTTCTTTTTTGGCTGGTGGAGCTACCTTGGCTGCTGGACGGCTCGAAGCCGAGGATGGGGTTCTGAAGTCCATCTCTGCATATAGTGGACACTATCGGCCAACAGACGAAACACTCGACGCGTTCTTATCATATCTCAGGGAAAATGGTGTCAATCTTGTTACCTTTCATGAATTTTGTGTAGGTATGCGTAGCTTGGACCAAATGGTAGTCAAGGAAGGATCATGGTCCTAG 1620 0.3772 MHFKTKTSAALLDIKIDREILDSVTVALKEYFRNDVSLVLLLDWYCCYWLLLLAVQHLIAEVSEIMTNDTVDKADLWKNKLIDQSLELLDYLPQAIQDICFLKEIHMEMFKYLKLHIIIFCVHLSSLSNFESVADCDTRDFTDQKREDMLVSDFVRLCFKYEGSAVQCSNQIGVSNGDSASVPYLKDWHFVKEYPDYVPYITPMFFCDDWLNLYLDNFRMNTYSDRDQQNKEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQCHLVFDRHEYIFLIEIHGFYNKSWALWYKNNQDIFFIQIIYELITIGVHFDQILNMKSCVYNIFDEVSDSNYPSFKKAIWLECTQEAGEIIFVPSGWLDLGNGKTLDLERCSRSKLRKQCIKYLGPQERENYEYVVCDGKIINNQSGDFLHTKKDSEDAKWIFVMSTEKKLYAGKKKKGLFHHSSFLAGGATLAAGRLEAEDGVLKSISAYSGHYRPTDETLDAFLSYLRENGVNLVTFHEFCVGMRSLDQMVVKEGSWS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06283 539 SMART cupin_9 183 390 IPR003347 -
Vifa1g06283 539 SUPERFAMILY Clavaminate synthase-like 133 376 - -
Vifa1g06283 539 Pfam Cupin-like domain 230 377 IPR041667 -
Vifa1g06283 539 ProSiteProfiles JmjC domain profile. 208 406 IPR003347 -
Vifa1g06283 539 Gene3D Cupin 110 377 - -
Vifa1g06283 539 PANTHER IQ DOMAIN-CONTAINING PROTEIN IQM3 376 517 IPR044159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06283 Vifa-Chr1 981657097 981660535 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa1g06283 Cupin_8 5.3e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06283 - - lja:Lj1g3v0342020.1 340.887