Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06270 ATGAGTGATACAAAAGAAAGCGTTCCCGCGCCTGTTAATATAGAGGAAGCTGGCCATGTGATTGGTGAAAATGGAAGTCCAAACCAAGCTTCAGCTAGTGCATATTTAAGAGATGACCATCAGATGATTATAGATAATCTTGCTGGCCTGGATTCATATCTTGATCGAGAGATGCATCTCGAAGTTCAACCTGATACTGCAGAAGAAACTTATGTGTCAGATGAAAAATATGGGAGGGAAGAAATACTTGCCGTGGATGAAAATATGAAACCCAAGGTTGTTTCGGAAGATATTCCACAAGAAACTGTTCAGGATACTCTTCACTTAGTCCCAGTTGAGGTTGATGATCAGATTCTGAATACAACTGAGTGTGAAACTGCTTCTGATGCGAAGGTGGAAGCTGAAAGACTTCCTCAGAGTAATAATGGCGTTGAGAATGTTGAGAATGATGTTGCTGCATGTCAAAATGGTGTTAGTGATGGTGATGCTGAAACGACTGGGATGGAGGTTGATGTGAAGCCTGTAGTTTGTGAAGTGGCTGATAGTAAAACTTGTGATAACGAACTTATATCGTCAAGTCATAACAATCCGACACCTTCTGATGCAAATGAACCTGTGCCGTCAAGTCATAATGATCCTACTACGCCACAACCTGCCCATGCTGAAACAGGGCCGGAAATCAAGAATGTTTTAGAAGTTGAAAGTAGTAAGGCTGGTGAGGAGCAAGCTGATGAGCATGCAGATAATGGGAATTCAGATTCGCAGCAGAACATGTTTTTCTTGGATGCTGATCATTATTATGATGGTAATGAGTCGGGAACGGAAGAGGACCAAGCAGTTTTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTCAAACCTCCTAAATTTTATGGGGAAGGACTTAATTGCCTTAAGTTATGGAGAGCTGTAATGAGATTGGGAGGCTATGAGAAGGTAACATCATGTAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAACCTCCAAAGACATGCACCACAGTTTCCTGGACTTTCCGGGGATTTTATGAGAAGGCCCTTCTTGATTACGAAAGGCATAACATAAAAGGTGGCGAGCTGAGTGTGCCTATCCCTTCTCCTCCAGAGCCTGTGAATGTTGAAAATCAGGCTTTAGTATCAGGTAGAGCCCGGAGATATGCTGCTGAACAGGCTATGCGCGGTTGGCACTCACAACGTCTTCTTGGCAATGGTGAAGTCAGTGACCCTATTATAAAGGATAGGAATTTGGTGTCTGTGCAAAAGCGAGAAAAGCAGCTTAAGAATATTAATATACTTAAACGTAAGAAGCCATCTTATATGGATAATGCAGTCAAAGCAGCGCGCAGTAAACCATCTAAACCACAGTTGGATACAGCTGTGGTTGACATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTAGTTCCTGGCCTTTTGCGGGAAGAGGTCCGAGTGCAATCAGACCCAGCAGGACGTTTGGTCATAAGTGGTGAGCCAGAGCATCTAAATAATCCCTGGGGCGTGACACCTTTCAAAAAGGTTGTGAATTTGCCCTCAAGAATTGATCCTCATCAGACATCAGCTGTGGTAACGTTGCATGGACAATTGTTTGTTCGTGTCCCATTTGAACAGACAGAATAG 1710 0.4292 MSDTKESVPAPVNIEEAGHVIGENGSPNQASASAYLRDDHQMIIDNLAGLDSYLDREMHLEVQPDTAEETYVSDEKYGREEILAVDENMKPKVVSEDIPQETVQDTLHLVPVEVDDQILNTTECETASDAKVEAERLPQSNNGVENVENDVAACQNGVSDGDAETTGMEVDVKPVVCEVADSKTCDNELISSSHNNPTPSDANEPVPSSHNDPTTPQPAHAETGPEIKNVLEVESSKAGEEQADEHADNGNSDSQQNMFFLDADHYYDGNESGTEEDQAVFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVMRLGGYEKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHNIKGGELSVPIPSPPEPVNVENQALVSGRARRYAAEQAMRGWHSQRLLGNGEVSDPIIKDRNLVSVQKREKQLKNINILKRKKPSYMDNAVKAARSKPSKPQLDTAVVDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHLNNPWGVTPFKKVVNLPSRIDPHQTSAVVTLHGQLFVRVPFEQTE 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06270 569 ProSiteProfiles ARID domain profile. 275 366 IPR001606 GO:0003677
Vifa1g06270 569 MobiDBLite consensus disorder prediction 188 218 - -
Vifa1g06270 569 MobiDBLite consensus disorder prediction 188 255 - -
Vifa1g06270 569 FunFam AT-rich interactive domain-containing protein 3 461 569 - -
Vifa1g06270 569 CDD ARID 277 362 - -
Vifa1g06270 569 SMART ARID_2 272 362 - -
Vifa1g06270 569 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 138 567 IPR045147 GO:0006357
Vifa1g06270 569 SUPERFAMILY ARID-like 268 374 IPR036431 GO:0003677
Vifa1g06270 569 Pfam Hsp20/alpha crystallin family 486 568 IPR002068 -
Vifa1g06270 569 MobiDBLite consensus disorder prediction 1 31 - -
Vifa1g06270 569 FunFam AT-rich interactive domain-containing protein 3 275 374 - -
Vifa1g06270 569 Pfam ARID/BRIGHT DNA binding domain 280 362 IPR001606 GO:0003677
Vifa1g06270 569 Gene3D - 469 569 IPR008978 -
Vifa1g06270 569 CDD ACD_sHsps_p23-like 488 564 - -
Vifa1g06270 569 MobiDBLite consensus disorder prediction 233 248 - -
Vifa1g06270 569 SUPERFAMILY HSP20-like chaperones 478 565 IPR008978 -
Vifa1g06270 569 SMART bright_3 276 367 IPR001606 GO:0003677
Vifa1g06270 569 Gene3D - 275 371 IPR036431 GO:0003677
Vifa1g06270 569 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 469 569 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06270 Vifa-Chr1 979134966 979144535 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06270 270 567 ARID Transcription Factor Family AT1G76510 63.366 1.46e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa1g06270 HSP20 4.4e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06270 - - psat:127119953 1066.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06270 1 979134966 979144535 Vifa1g06270 1 979134966 979144535 ECH