Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06265 ATGATGACATCTAGCTACTCATCAAATTCTCCATGTGCTGCTTGCAAGTTTCTAAGAAGAAAATGCAATGAAGATTGCATATTTGCACCATATTTTCCACCAGAAGAGCCTCATAAATTTATAAATGTTCACAAAATATTTGGTGCAAGTAATGTTAGCAAAATTCTGAATGAAGTTTTACCTCATCAAAGGGAAGATGCAGTGAACTCTTTAGCTTATGAGGCTGAAGCAAGGATTAAAGATCCAGTTTATGGTTGTGTTGGAGCTATTTCAGTGCTTCAGAAACAACTTCTTAGCCTTCAAAAAGAACTTGATGCCACTCATGCTGATTTGATTAGGTTTACTCATCAAGGTTCTTCTTCTTTGGGACATGTTCACTCTCATGCTTTTTTTAATAACCCTTCTAACTAA 411 0.3552 MMTSSYSSNSPCAACKFLRRKCNEDCIFAPYFPPEEPHKFINVHKIFGASNVSKILNEVLPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQKQLLSLQKELDATHADLIRFTHQGSSSLGHVHSHAFFNNPSN 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06265 136 Coils Coil 90 110 - -
Vifa1g06265 136 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Vifa1g06265 136 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Vifa1g06265 136 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06265 Vifa-Chr1 978234180 978234590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06265 8 114 AS2 family AT3G27650 82.243 5.15e-66 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g06265 LOB 6.9e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06265 - - mtr:11423777 235.343