Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06263 ATGTCTGGGTTAGAGGAATTAAGAAAAAAGCTTGCACCTTTATTTGATGCTGAAAAGGGGTTTTCATCATCAACTTCATCTTTAGACCCAAATGATTCTTACACATTTTCAGATGGTGGAACTGTAAACTTGTTGAGTAGATCATATGGGGTTTACAACATCAATGAATTAGGGTTACAGAAGTACTCAACTTCTAGGTCTGTTGATGATGAGATTGATGATGGTGAGAAGACATATAGGTGTGGTTCTCATGAGATGAGGATTTTTGGAGCAATTGGTAGTGGTGCTAGTAGTGTTGTTCAAAGAGCTATGCATATACCAACTCATAGGGTTCTTGCTTTAAAGAAAATCAATATCTTTGAGAAGGAGAAACGGCAGCAGCTACTTACTGAGATAAGGACACTATGTGAAGCACCTTGTTATGAGGGTCTTGTGGAATTTCATGGTGCATTTTACACTCCAGATTCTGGACAAATAAGCATAGCTTTGGAGTACATGAATGGAGGGTCACTTGCAGATATTTTACGAAGTCATAGAATGATTCCTGAACCTATTTTATCGTCCATGTTTCAGAAGCTCTTACATGGTCTAAGCTATCTGCATGGAGTCAGATATTTAGTTCATAGAGACATAAAGCCTGCCAATTTACTTATTAATCTCAAAGGGGAGCCGAAAATTACAGATTTCGGTATTAGTGCTGGCTTAGAGAATTCAGTTGCAATGTGTGCTACATTCGTTGGCACTGTTACATATATGTCACCCGAACGAATTCGAAATGAAAACTATTCTTATCCAGCTGATGTTTGGAGCCTAGGTCTTGCGCTTCTCGAGTGCGGTACGGGAGAATTCCCATATACAGCCAATGAAGGTCCTGTCAATCTTATGTTGCAGATCCTTGATGATCCATCACCATCACCGTCAAAAGAGAAGTTTTCGCCTGAGTTCTGCTCCTTTGTTGATGCTTGCTTACAGAAGGATCCAGATAAGAGACCAACGGCAGAACATCTTCTTTTGCACCCTTTCATCACAAAGTACGAGACTGCCAAGGTAGATTTAGCAGGATTTGTTCGCAGTGTTTTTGATCCTAAGCAAAGAATGACGGACCTGGCAGACATATTGACAATACATTATTACTTACTATTCGATGGACCCGACGAGTTGTGGCAACATACAAAAAACTTATATAACAAAAACTCAATTTTCAGTTTCTCTGGGAAACAACATGTTGGTCCTAACAATATCTTCACAACTCTATCGAGTATCCGAACAACATTAATCGGCGATTGGCCACCAGAAAAGTTAGTGCACGTCGTTGAGAAGCTTCAGTGTCGAGCACACGGTGAAGACGGTGTTGCAATCAGAGTCTCAGGATCCTTCATAATTGGCAATCAGTTTCTGATATGTGGAGATGGCATTCAAGTAGAGGGATTACCAAACTTTAAGGATCTTGGAATTGATATTCCTAGTAAGAGAATGGGTACATTTCATGAACAATTCATAGTGGAACCAACCACTCAAATTGGATGTTACACCATTGTTAAACAAGAACTGTACATTAACCAATAA 1566 0.3966 MSGLEELRKKLAPLFDAEKGFSSSTSSLDPNDSYTFSDGGTVNLLSRSYGVYNINELGLQKYSTSRSVDDEIDDGEKTYRCGSHEMRIFGAIGSGASSVVQRAMHIPTHRVLALKKINIFEKEKRQQLLTEIRTLCEAPCYEGLVEFHGAFYTPDSGQISIALEYMNGGSLADILRSHRMIPEPILSSMFQKLLHGLSYLHGVRYLVHRDIKPANLLINLKGEPKITDFGISAGLENSVAMCATFVGTVTYMSPERIRNENYSYPADVWSLGLALLECGTGEFPYTANEGPVNLMLQILDDPSPSPSKEKFSPEFCSFVDACLQKDPDKRPTAEHLLLHPFITKYETAKVDLAGFVRSVFDPKQRMTDLADILTIHYYLLFDGPDELWQHTKNLYNKNSIFSFSGKQHVGPNNIFTTLSSIRTTLIGDWPPEKLVHVVEKLQCRAHGEDGVAIRVSGSFIIGNQFLICGDGIQVEGLPNFKDLGIDIPSKRMGTFHEQFIVEPTTQIGCYTIVKQELYINQ 521
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06263 521 FunFam mitogen-activated protein kinase kinase 3 57 167 - -
Vifa1g06263 521 ProSiteProfiles Nuclear transport factor 2 domain profile. 369 519 IPR018222 -
Vifa1g06263 521 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 22 399 - -
Vifa1g06263 521 FunFam mitogen-activated protein kinase kinase 3 168 364 - -
Vifa1g06263 521 SUPERFAMILY NTF2-like 364 464 IPR032710 -
Vifa1g06263 521 CDD PKc_MAPKK_plant_like 87 346 - -
Vifa1g06263 521 SUPERFAMILY Protein kinase-like (PK-like) 88 376 IPR011009 -
Vifa1g06263 521 Gene3D Phosphorylase Kinase; domain 1 54 167 - -
Vifa1g06263 521 FunFam Mitogen-activated protein kinase kinase 3 366 520 - -
Vifa1g06263 521 Gene3D - 369 519 - -
Vifa1g06263 521 SMART serkin_6 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06263 521 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Vifa1g06263 521 Pfam Protein kinase domain 90 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06263 521 ProSiteProfiles Protein kinase domain profile. 86 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06263 521 ProSitePatterns Protein kinases ATP-binding region signature. 92 115 IPR017441 GO:0005524
Vifa1g06263 521 Gene3D Transferase(Phosphotransferase) domain 1 168 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06263 Vifa-Chr1 977558431 977561839 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06263 36 521 MAP Kinase Kinase Gene Family AT5G40440 76.543 0.0 789
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE7 Vifa1g06263 Pkinase 2.3e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06263 K20607 - gmx:100784935 947.962