Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06262 ATGCTTTCTTTTACATGGCAAAGAAGTATTGCCTTTTTTAATCTGTTTCTTGCAGTACTTGTTGCAAATTCCACCTTTTGCTTTTCTGCCAAGGTTTATGTCGTCTACATGGGAAGCAAGAGTAATGATCAAGACCCAGATAGTATTCTGAAGCAGAATCATCAAATGCTTGCAGAAGTTAATAGGGGAAGTATTGAACAAGCACAAGCTTCACATATTTATAGCTACAAACATGGTTTCAAAGGCTTTGCAGCAAAGCTGACAGAAGAACAGGCTTACCAGATTTCAAAAATGGAAGGAGTGGTGTCTGTGTTCCCGAATTCGAAAAGAATGTTGCACACTACTCATTCATGGGATTTCATGGGACTTTTGGATGATGAAACCATGGAGAATATGGGGTACCCCAACAAAAACCAAGCAAATGTTATTGTTGGTATCATTGATACAGGAATTTGGCCAGAATCCCCGAGCTTTAGAGACACCGACATGCCACCAGTGCCACGCAGATGGAAAGGCCGTTGTCAAATAGGAGAAGCATTCAATGCTTCATCTTGTAACAGGAAAGTGATAGGAGCAAGATACTATATGAGTGGATATGAAGCAGAAGAAGGGTCAGACAAAAAAGTCTCTTTCAGATCTGCAAGAGACAGCGCCGGTCATGGGAGCCATACAGCTTCCACAGCAGCAGGACGATACGTGGAAGATATGAACTATAAGGGTTTGGCAGCAGGAAAAGCTAGGGGAGGTGCACCTATGGCTAGAATTGCTGTTTACAAAACATGTTGGAATTCAGGTTGCTATGATGTGGACTTGTTAGCTGCCTTTGATGATGCCATAAGAGATGGTGTTCACATTATATCACTATCTCTTGGTCCACAATCTCCTCAAGGTGACTATTTCAACGATGCAATATCGGTGGCGTCTTTCCATGCTGCTAGACATGGAGTTCTTGTAGTAGCATCAGCTGGAAATGAAGGAACTCCTGGCTCTGCAACAAACCTTGCACCATGGATCATCACTGTTGCTGCTGGCTCAACAGATAGAGATTTCACCTCTGATATCATATTAGGAAATGGTGTTAACATCAAGGGTGACAGTCTCAGTCTATTGGAAATGAATGCCTCCAGAAGAACAATTCCTGCATCTGAAGCCTTTGCAGGATATTTTACTCCTTATCAATCCAGTTACTGTTTGGATAGCTCATTAAACAAGACCAAGACCAAAGGGAAGGTTCTGGTGTGTAGACACGACGACGGTTCAATAGCGTCAAAATTGGAAAAAAGTAGGGTAGTGAAAGAGGCAGGTGGAGTTGGGATGATACTTATTGATGAAACAGACCAAGAAGTTGCCATCCCATTTGTCATACCTTCGGCTATTGTTCGAGCGAAAACGGGAGAACAGATTCTATCATATATCAATAGCACAAGAATGCCTCTGTCTAGGATTTCTAGGGCCAAGACAGTAGTAGGAGTTCAACCTGCACCGCGTGCAGCAGCATTTTCTTCCAAAGGCCCTAATTCCTTAACCCCCGAAATTTTGAAGCCCGATGTTTTGGCTCCCGGGTTAAACATCCTGGCAGCATGGTCTCCAGCAGCAGCTGGAAACATGAAGTTCAATATTCTATCAGGAACCTCTATGTCTTGTCCTCATGTAACTGGAATTGCAGCCTTAATCAAAGCTGCACATCCTTCATGGTCTCCGTCTGCTATCAAATCTGCCATCATGACTACCGCAACAATTGTGGATAAGCAAAACAAACCAATTCGAGCGGAACCTGATAGAAGAATGGCTGATGCATTTGATTATGGATCAGGGTTTGTGAACCCTGCAAGAGTTCTGGATCCCGGTCTTGTGTATGATTCACAGCCAGAAGATTTTGTTGCATTCCTGTGTTCAATTGGTTATGATGCAAAGTCACTCCACCTTGTTACAAGAGACAGCAGCACATGCGCTGGGGCATTCAAAACACCATCTGACCTGAATTATCCATCTATTACAGTTCCTAATCTTGAAGACAGCTTTTCAGTGACTCGTGTTGTGACTAATGTTGGAAAAGCAAGAAGTACCTATGAAGCTGAAGTGCTGTCTCCGGACGGAGTTAATGTTACTGTTGTGCCAAGTTGGTTAGTATTCACAAGACCAGGACAGAAAATCAAGTTCACTGTGAATTTCCAAGTGATTGCTCCCTTAAAGGGCTATGCATTTGGGTTCTTAACATGGAGTAACAGAATATCAAAGGTCACCAGTCCTTTAGTTGTAAAAGTTGCAACACCATTCCTTGGGTCGGTCAGATAA 2295 0.4296 MLSFTWQRSIAFFNLFLAVLVANSTFCFSAKVYVVYMGSKSNDQDPDSILKQNHQMLAEVNRGSIEQAQASHIYSYKHGFKGFAAKLTEEQAYQISKMEGVVSVFPNSKRMLHTTHSWDFMGLLDDETMENMGYPNKNQANVIVGIIDTGIWPESPSFRDTDMPPVPRRWKGRCQIGEAFNASSCNRKVIGARYYMSGYEAEEGSDKKVSFRSARDSAGHGSHTASTAAGRYVEDMNYKGLAAGKARGGAPMARIAVYKTCWNSGCYDVDLLAAFDDAIRDGVHIISLSLGPQSPQGDYFNDAISVASFHAARHGVLVVASAGNEGTPGSATNLAPWIITVAAGSTDRDFTSDIILGNGVNIKGDSLSLLEMNASRRTIPASEAFAGYFTPYQSSYCLDSSLNKTKTKGKVLVCRHDDGSIASKLEKSRVVKEAGGVGMILIDETDQEVAIPFVIPSAIVRAKTGEQILSYINSTRMPLSRISRAKTVVGVQPAPRAAAFSSKGPNSLTPEILKPDVLAPGLNILAAWSPAAAGNMKFNILSGTSMSCPHVTGIAALIKAAHPSWSPSAIKSAIMTTATIVDKQNKPIRAEPDRRMADAFDYGSGFVNPARVLDPGLVYDSQPEDFVAFLCSIGYDAKSLHLVTRDSSTCAGAFKTPSDLNYPSITVPNLEDSFSVTRVVTNVGKARSTYEAEVLSPDGVNVTVVPSWLVFTRPGQKIKFTVNFQVIAPLKGYAFGFLTWSNRISKVTSPLVVKVATPFLGSVR 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06262 764 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 24 113 IPR037045 -
Vifa1g06262 764 Gene3D Peptidase S8/S53 domain 141 626 IPR036852 GO:0004252|GO:0006508
Vifa1g06262 764 PRINTS Subtilisin serine protease family (S8) signature 139 158 IPR015500 -
Vifa1g06262 764 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Vifa1g06262 764 PRINTS Subtilisin serine protease family (S8) signature 542 558 IPR015500 -
Vifa1g06262 764 Pfam Fibronectin type-III domain 659 753 IPR041469 -
Vifa1g06262 764 Pfam PA domain 385 468 IPR003137 -
Vifa1g06262 764 ProSitePatterns Serine proteases, subtilase family, serine active site. 543 553 IPR023828 -
Vifa1g06262 764 Pfam Subtilase family 141 582 IPR000209 GO:0006508|GO:0008236
Vifa1g06262 764 FunFam Subtilisin-like protease SBT1.5 630 756 - -
Vifa1g06262 764 Gene3D - 347 489 - -
Vifa1g06262 764 Pfam Peptidase inhibitor I9 32 113 IPR010259 -
Vifa1g06262 764 CDD Peptidases_S8_3 112 579 IPR034197 -
Vifa1g06262 764 FunFam Subtilisin-like protease SBT1.5 141 356 - -
Vifa1g06262 764 CDD PA_subtilisin_like 353 482 - -
Vifa1g06262 764 SUPERFAMILY Subtilisin-like 112 617 IPR036852 GO:0004252|GO:0006508
Vifa1g06262 764 ProSiteProfiles Serine proteases, subtilase domain profile. 117 613 - -
Vifa1g06262 764 FunFam Subtilisin-like protease SBT5.3 22 113 - -
Vifa1g06262 764 Gene3D - 630 756 - -
Vifa1g06262 764 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 33 753 IPR045051 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06262 Vifa-Chr1 977511238 977514815 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06262 8 754 Subtilisin-like Serine Gene Family AT4G10520 43.137 0.0 568
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06262 - - gmx:100780538 1232.24