Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06258 ATGCTTCCGATTCAGCATCGCTGCCGCCACCACCACTACACGGCTTACCTCACCGCCCTCATCGGCATTCTTCTCCTCTTCCCATCAATAACCTCCCAAGCTCAAATACTCAAACGAGAATTTTACTCTTACGGACCCTTCAATACCAGCAACCAACACTTTTTCGTAACTTTAGCCTCTGCAACCATCCACCTCGACGCCTTCCAGGTCACGCCGGACAGCGCAGGAAGTACAACGATCGTCTCCATGTTTAACAACTCCGGCAGAATCTTTTTCAGAGACCCTTTCAAACTCTGGGAAGATTCCTCCACCACCGGAAAACTCGTTTCCTTCAACACCTCTTTCCTCATCAACATGTTACCTTACATGAACCAAACTCCCGGTGAAGGTCTCGCTTTCCTCATCGCACCTTCCATCTCCATCCCTCTCAACAGCCACGGCGGCTACCTCGGTTTAACAAACGCCTCCACCGACGGTAATCCCACAAACCGTTTCATCGCCGTTGAACTCGACACCGTTAAACAATCCTACGACCCTGACAACAACCACATGGGACTAAATATAAACAGCGTCCATTCCAACGTTACAGTTCCTCTCGATTTCGAAATCGCTCCGAAAGTTGCTAAGATATTCGCTTTATGGGTTGAATACGACGGTGACCGGAAAAACATGGATGTCTATATAGCGGAGCAGCCTTCAAAGGATGGACCTATAGTGGAGAAACCGGTCAAACCGATTTTATCTTCGGGTCTTGATCTAAAACAGATTCTGAGTCAGGACTCTTATTTTGGGTTTTCTGCTTCAACAGGAAGCAGTGTTGAGTTAAACTGTGTACTTAGATGGAACATTTCAATAGAAGTTTTTGATGAAAAAAACAACAAAGCGTTAACGATTGGATTAGCTGTTGGTGTTCCTGCTTTGGTTTTGATTTTACTATGTGGGGGATTTTGGTATTATTATGTTTTTAAGAAAAAGAAAAGTGATGAGAACGGTTCGAATTCTCAGATAATGGGAAAATTGAAGAGTTTACCAGGAACACCGAGAGAGTTTAGTTATCAGGAACTTAAGAAAGCTACTAGTAATTTTGATGAGAAGAATAAACTTGGACAAGGTGGATACGGTGTCGTTTATAGAGGAACATTGGTTAAGGATAATTTGGAGGTTGCTGTTAAGATGTTTTCTAGAGATAAAATGAAAAGTACTGATGATTTCTTGGCTGAACTAAGCATCATCAATCGTCTTCGTCATAAGCATCTAGTTAAATTACAAGGATGGTGCCACAAAAATGGAGTATTACTCTTAGTTTATGACTACATGCCTAAAGGAAGTTTAGACAGTCACATATTCTGCGAAGAAGGAACAAGCACATCCCCGCTAAGTTGGCATCTCAGGTACAAAATCCTCTCAGGCGTGGCTTCTGCATTAAACTACCTTCACAACGAATACGATCAGACAGTAGTACACCGAGACCTCAAAGCAAGCAACATAATGCTCGACTCAGACTACAACGCGCGCTTAGGTGATTTCGGCCTAGCGCGTGCACTAGAAAATGAAAAAACATCATATTTAGCAGAACTAGAAGGCGTACAAGGTACAATGGGATACATAGCACCAGAATGTTTCCACACAGGAAAAGCAACAAGAGAATCAGATGTTTATGGATTTGGTGCAGTGTTGCTTGAAACAGTGTGTGGACAAAGACCTTCTTGGACTAAGATAGAAGGGTATCAGTTTCTGGTTGATTGGGTTTGGTATTTGCATCGCGAAGGGAGGATACTGGACGCTGTTGATCAAAGTGTTGGGAGTGATTATGATGTTGAAGAGGCGGAGAGGATATTGAAATTGGGATTGATTTGTTCTCATCCTATTGCAGGTGAGAGACCAAATTTGCAAACAATTGTTCAGATTTTGTCTGGCTCTGTGAGTGTGCCTCATGTGCCACCTTTTAAACCGTCTTTTATGTGGCCAGCTGTGGATTTAGCTAGTCTTGCAAGTACTGATTTTACAAAAACAAATACTAGTGAGTATGCACCAATCAATGGTAACTCACAATCTTCGGTGCATGTTCAATTCTCAGATAACAGCTCTTTGGTGTAA 2097 0.4268 MLPIQHRCRHHHYTAYLTALIGILLLFPSITSQAQILKREFYSYGPFNTSNQHFFVTLASATIHLDAFQVTPDSAGSTTIVSMFNNSGRIFFRDPFKLWEDSSTTGKLVSFNTSFLINMLPYMNQTPGEGLAFLIAPSISIPLNSHGGYLGLTNASTDGNPTNRFIAVELDTVKQSYDPDNNHMGLNINSVHSNVTVPLDFEIAPKVAKIFALWVEYDGDRKNMDVYIAEQPSKDGPIVEKPVKPILSSGLDLKQILSQDSYFGFSASTGSSVELNCVLRWNISIEVFDEKNNKALTIGLAVGVPALVLILLCGGFWYYYVFKKKKSDENGSNSQIMGKLKSLPGTPREFSYQELKKATSNFDEKNKLGQGGYGVVYRGTLVKDNLEVAVKMFSRDKMKSTDDFLAELSIINRLRHKHLVKLQGWCHKNGVLLLVYDYMPKGSLDSHIFCEEGTSTSPLSWHLRYKILSGVASALNYLHNEYDQTVVHRDLKASNIMLDSDYNARLGDFGLARALENEKTSYLAELEGVQGTMGYIAPECFHTGKATRESDVYGFGAVLLETVCGQRPSWTKIEGYQFLVDWVWYLHREGRILDAVDQSVGSDYDVEEAERILKLGLICSHPIAGERPNLQTIVQILSGSVSVPHVPPFKPSFMWPAVDLASLASTDFTKTNTSEYAPINGNSQSSVHVQFSDNSSLV 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06258 698 FunFam probable L-type lectin-domain containing receptor kinase S.5 439 642 - -
Vifa1g06258 698 ProSiteProfiles Protein kinase domain profile. 362 624 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06258 698 CDD lectin_legume_LecRK_Arcelin_ConA 42 282 IPR001220 GO:0030246
Vifa1g06258 698 ProSitePatterns Protein kinases ATP-binding region signature. 368 391 IPR017441 GO:0005524
Vifa1g06258 698 SUPERFAMILY Concanavalin A-like lectins/glucanases 42 286 IPR013320 -
Vifa1g06258 698 Pfam Legume lectin domain 42 292 IPR001220 GO:0030246
Vifa1g06258 698 ProSitePatterns Serine/Threonine protein kinases active-site signature. 486 498 IPR008271 GO:0004672|GO:0006468
Vifa1g06258 698 Gene3D - 41 300 - -
Vifa1g06258 698 FunFam probable L-type lectin-domain containing receptor kinase S.5 347 438 - -
Vifa1g06258 698 Pfam Protein kinase domain 363 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06258 698 CDD STKc_IRAK 368 637 - -
Vifa1g06258 698 PANTHER - 79 648 - -
Vifa1g06258 698 Gene3D Transferase(Phosphotransferase) domain 1 439 643 - -
Vifa1g06258 698 Gene3D Phosphorylase Kinase; domain 1 347 438 - -
Vifa1g06258 698 ProSitePatterns Legume lectins beta-chain signature. 166 172 IPR019825 -
Vifa1g06258 698 SUPERFAMILY Protein kinase-like (PK-like) 343 637 IPR011009 -
Vifa1g06258 698 SMART serkin_6 362 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06258 Vifa-Chr1 976686670 976690482 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06258 86 653 Receptor kinase-like Gene Family AT5G55830 37.954 5.70e-126 388
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vifa1g06258 Pkinase 9.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06258 - - tpra:123907446 1067.37