Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06229 ATGGCAACAATAGTTTCAGGATCAATGGGGAGTGACGTATGGAAGGCGCATTTGGGTATGGCATTGGTGCAGCTATTCAATGGTGGGTACCATGTAATTACCAAAGTAGCCCTTAACGTTGGGGTTAACCAGTTAGTCTTTTGCCTCTACAGAGATCTAATTGCCCTCTCTATCCTTGCTCCTATCGCTTATATTCGTGAAAAACAGACACGACCGCCCATTACTAAGGACCTCCTGATATCATTCTTTTTTCTTGGATTAACTGGGATATTTGGCAACCAACTTCTGTTTCTTCTTGGCTTAACCTATACAAATCCAACTTATGCTGCTGCCACACAGCCGGCCATTCCAGTCTTTACATTTTTGTTCGCTGTAATAATGGGTACAGAAAGAGTAAACTTGCTTAGATATGAAGGTCTGGCAAAGGTTGCAGGAACTATTATCTGTGTTTCGGGTGCCGTATTGATGGTTTTGTATCGCGGTCCAGCTGTAGTAGGAAATACAGAAATTGGTCACGTAGCACAAAATGAAATTAGTGCGAGAGGGAACTGCATGTGTATGGCTGCTTTTCTGGCCATTCAGGCACCGGTATTAAAAAAATATCCTTCAAACCTATCTGTCACGGCATATTCATACTTCTTCGGAGCTGCTCTGATGGTGGTGGTGTCATTTTTTATGACTAACGAGTCAACTGACTGGAGTCTGACATCGTCTGAAATACTTGCTGTTATTTATGCTGGAACTATTGCATCCGCTCTTAACTATGGGCTCATTACATGGTGCAATAAGATTTTAGGTCCAGCTTTGGTTGCCCTATACAATCCACTTCAACCCGGCTTTTCTGTCATACTGTCTCAGATATTCCTTGGAAGTCCAGTTTACTTGGGAAGCATCATCGGTGGATCGTTTATCATTGCTGGTCTATATACAGTTACTTGGGGATCATATAGAGAAAGACGAGCAACGGTTGGAGTTACTCCTCAGGGTCCCGGGGAAACTGAGCCACTTATCCATGATAAAACTGCATATCAGATAGGTCAGATTTTTTCTGGAACCTCTAGTTTATCTCCAAAGCTATCAGATTAA 1086 0.4254 MATIVSGSMGSDVWKAHLGMALVQLFNGGYHVITKVALNVGVNQLVFCLYRDLIALSILAPIAYIREKQTRPPITKDLLISFFFLGLTGIFGNQLLFLLGLTYTNPTYAAATQPAIPVFTFLFAVIMGTERVNLLRYEGLAKVAGTIICVSGAVLMVLYRGPAVVGNTEIGHVAQNEISARGNCMCMAAFLAIQAPVLKKYPSNLSVTAYSYFFGAALMVVVSFFMTNESTDWSLTSSEILAVIYAGTIASALNYGLITWCNKILGPALVALYNPLQPGFSVILSQIFLGSPVYLGSIIGGSFIIAGLYTVTWGSYRERRATVGVTPQGPGETEPLIHDKTAYQIGQIFSGTSSLSPKLSD 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06229 361 PANTHER WAT1-RELATED PROTEIN 18 319 IPR030184 GO:0016020|GO:0022857
Vifa1g06229 361 Pfam EamA-like transporter family 185 312 IPR000620 GO:0016020
Vifa1g06229 361 Pfam EamA-like transporter family 17 157 IPR000620 GO:0016020
Vifa1g06229 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 213 318 - -
Vifa1g06229 361 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06229 Vifa-Chr1 974045328 974048045 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06229 5 246 Nodulin-like Gene Family AT3G45870 65.918 3.33e-115 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06229 - - psat:127119930 645.966