Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06226 ATGGGGGGTGACACGTGGAAGGCCCATTTGGGCATGGCGGTTGTTCAGCTATTATATGGTGGCTACCATGTCATCACCAAAGTTGCCCTTAATGTTGGAGTCAACCAACTTGTCTTCTGCTTCTATAGGGATCTCCTTGCTCTCACCATCCTTTCTCCAATTGCTTTTTACAAAGAAAGACAGATAAGGCCACCCGTTACTAAGAAGCTATTAGTGTCATTCTTCTTTCTTGGATTAACTGGGATATTTGGTAACCAGCTCTTGTTTCTTATTGGTTTAAGTTATACGAATCCAACTTATGCCGCTGCCTTACAACCAGCTATTCCTGTCTTTACCTTTCTCTTTGCTGTCATAATGAGTGTAGAAAGAGTGAATTTGAAGAGTTTTGAAGGTCTGGCAAAGGTTGGAGGAACTCTTATCTGTGTTTCGGGCGCTGTATTGATGGTTTTGTATCGCGGCCCGTCGTTGATAGGATATGCGGAACTGGATGTTATACAACAGAATGAAATAAGTGTTAGTGGTCAGCCAGAGCCTTCTGGATGGTTGATCGGTGGTTTAAAGGATCTTGGATTAGATAATTTTGAACTTGGAGTTGTGTTCTTGATAGGGAACTGCATGTGCATGGCTGCTTTTCTAACCATTCTGGCACCGGTATTAAAAAAGTATCCTGCAAATCTATCTGTGACATCGTATTCATTCTTCTTTGGAGTTGTACTAATGGCGATAGTCTCGTTATTCATGACTGATCTATCAAGTGACTGGAATTTGACACAACCAGAAATACTTGCTATTGTTTATGCTGGAACTATTGCATCTGCCTTTAACTATGCAGTCATTAGTTGGTGCAACAAGATATTAGGGCCAGCTTTGGTGTCCCTATACAATCCACTTCAACCTGGATTTTCTGCTCTGCTGTCTCAGATATTCCTTGGAAGTCCAATTTACTTAGGAAGTGTCATAGGGGGGTCTTTGATCATTGCTGGTCTATATACTGTTACATGGGCATCTTATAAAGAAAAACAGGCAATAGTTGAAATTACTTCTCATGAATCTTGGGTTTCTGAACCACTTATTCATGAAAAAACTGCACACCAAAGAGATCATATATTTTCAGCATCCTCCAGCGCATTATCAAATCCAAAATCGTACGAGGCTTCCACCAAGTAA 1167 0.4087 MGGDTWKAHLGMAVVQLLYGGYHVITKVALNVGVNQLVFCFYRDLLALTILSPIAFYKERQIRPPVTKKLLVSFFFLGLTGIFGNQLLFLIGLSYTNPTYAAALQPAIPVFTFLFAVIMSVERVNLKSFEGLAKVGGTLICVSGAVLMVLYRGPSLIGYAELDVIQQNEISVSGQPEPSGWLIGGLKDLGLDNFELGVVFLIGNCMCMAAFLTILAPVLKKYPANLSVTSYSFFFGVVLMAIVSLFMTDLSSDWNLTQPEILAIVYAGTIASAFNYAVISWCNKILGPALVSLYNPLQPGFSALLSQIFLGSPIYLGSVIGGSLIIAGLYTVTWASYKEKQAIVEITSHESWVSEPLIHEKTAHQRDHIFSASSSALSNPKSYEASTK 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06226 388 PANTHER WAT1-RELATED PROTEIN 10 347 IPR030184 GO:0016020|GO:0022857
Vifa1g06226 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 232 338 - -
Vifa1g06226 388 Pfam EamA-like transporter family 9 133 IPR000620 GO:0016020
Vifa1g06226 388 Pfam EamA-like transporter family 196 333 IPR000620 GO:0016020
Vifa1g06226 388 SUPERFAMILY Multidrug resistance efflux transporter EmrE 42 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06226 Vifa-Chr1 973809352 973812101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06226 4 267 Nodulin-like Gene Family AT3G45870 62.500 9.75e-110 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06226 - - gmx:100787738 581.637