Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06223 ATGTCTCCTTACTTTCTCTCTTCAAACCCAAAAATCCATACTCTCTCTATGTTACCTTCTCATTCAACCCTACAAATTCCAAACCACATAACCATACCCAAGTTTCACCCTTTTCAATTCTCTCATTCTCACCATTTTTCTTCTTCACCACTTAGACTCACCATTGATAAATTTTCATGCCCATCTTCTTCTTTCTTTCAAACTCTTAGAAAGTCTTCACCTTTTCTCATTTCCACTCCAAAAATCCATTCTTTTAGAATCCTTGCTGCTTCTCTACCAGAGGGACAAAGTCATGAACCAACTCAACCTTCTGGTGTTTTTCAGTCTCTACAACTTGCTTTCATGTTTGCTACTTGGTATCTCTTGAATATTTACTTCAACATTTACAACAAACAGGTTCTAAAAGTCTATCCATTTCCAGCAACAGTTACAGCATTTCATTTTGGTTTTGCTTCATTGGTGATTAATTTGATCTGGATTTTGAATCTCCATCCAAGACCAAACATTAGGAGATCACAGTTTGCAGCAATTCTTCCATTGGCTGTGGTTCATACATTCGGAAACATGTTGACCAACATTAGTCTTGGCAAGGTTTCTGTTTCATTCACTCATACCATCAAAGCTATGGAGCCTTTCTTCACCGTTGTTCTTTCATCCCTTCTCCTCGGTGAGGTGCCTACTTTTTGGGTGGTTTCTTCTCTTTTACCAATAGTTGGTGGAGTGGCATTGGCTTCAATGACTGAAGTCTCTTTCAATTGGATTGGATTCAGCACTGCAATGGCATCCAACCTTACGAATCAATCGCGGAACGTTATGAGCAAAAAACTAATGGCTAATGAAGAGGAAGCTTTGGACAATATCAATCTCTATTCTGTTATAACCATTATTTCCTTTTTCACTTTGGTACCATGCGCTATATTTTTGGAGGGTTTCAAGTTTACTCCTTCGTATCTGAAATCTGCTGCAAGCCAGGGATTGAATGTTAGAGAGTTATGCCTAAGATCAGTTTTGGCTGCATTCTGCTTCCATGCATACCAGCAGGTTTCATATGGGATATTAGAGAAAGTGTCCCCTGTGACACACTCAGTTGGAAATTGTGTGAAGCGTGTGGTTGTCATAGTCTCTTCTGTCATCTTCTTCCAAACTCCTGTCTCACCTATTAATGCACTTGGAACTGCTATTGCACTTGTTGGTGTTTTCTTGTATTCAAGAGCAAAGAGGATTAAGCCAAAAACATATACAGCATAA 1248 0.3902 MSPYFLSSNPKIHTLSMLPSHSTLQIPNHITIPKFHPFQFSHSHHFSSSPLRLTIDKFSCPSSSFFQTLRKSSPFLISTPKIHSFRILAASLPEGQSHEPTQPSGVFQSLQLAFMFATWYLLNIYFNIYNKQVLKVYPFPATVTAFHFGFASLVINLIWILNLHPRPNIRRSQFAAILPLAVVHTFGNMLTNISLGKVSVSFTHTIKAMEPFFTVVLSSLLLGEVPTFWVVSSLLPIVGGVALASMTEVSFNWIGFSTAMASNLTNQSRNVMSKKLMANEEEALDNINLYSVITIISFFTLVPCAIFLEGFKFTPSYLKSAASQGLNVRELCLRSVLAAFCFHAYQQVSYGILEKVSPVTHSVGNCVKRVVVIVSSVIFFQTPVSPINALGTAIALVGVFLYSRAKRIKPKTYTA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06223 415 PANTHER SOLUTE CARRIER FAMILY 35 112 407 - -
Vifa1g06223 415 Pfam Triose-phosphate Transporter family 110 403 IPR004853 -
Vifa1g06223 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 152 247 - -
Vifa1g06223 415 SUPERFAMILY Multidrug resistance efflux transporter EmrE 328 407 - -
Vifa1g06223 415 NCBIfam Tpt phosphate/phosphoenolpyruvate translocator 110 411 IPR004696 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06223 Vifa-Chr1 973242985 973246199 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06223 31 415 Antiporters AT5G33320 57.357 4.57e-146 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06223 K15283 - gmx:100819280 574.704