Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06221 ATGGCTGCTACAGCAACTGCCGGTCCTAGGTATGCTCCAGCTGATCCTACCCTTCCTAAACCATGGAAGGGCCTTGTGGATGGCAAGACAGGATATCTTTACTTTTGGAATCCTGAGACAAATGTCACCCAGTACGAGAGGCCAGCTGCCCCACCTAAGCCATCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACAATCGTCTCAAGGGCGTTGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGGAATGGAAATGGCGGGTCGGATGAAAGTGGATCCCGGAGCTATCAGAGTTCCAAGGTTGGCACTTTTAGTTCTCATAATAATGTAGAAAATGGAACACATGTTGCTGAAAGTGTTAGTTCTATCAAAGGTCACGTAGCATCTGATACAGGACCTGCATTAACTCCAGAGGCTTATAGACGTCGTCATGAGATCACTGTTACTGGAGATAATGTGCCTCCACCTGTTACATCATTTGCGTCTTCTGGCTTTCCATCCGAGATTCTTAGAGAGGTACAAAATGCTGGGTTCTCAGCCCCAACTCCAATTCAGGCTCAATCGTGGCCCATTGCCCTTCAAAGTAAAGATATAGTTGCCATTGCTAAAACAGGTTCAGGGAAAACCTTGGGGTATTTACTTCCAGCATTTATTCACCTCAAGCGCACAAATAATAATGCCAAAATGGGCCCCACAATATTGGTACTTTCACCCACAAGGGAGTTGGCAACACAAATTCAAGATGAAGCTGTGAAGTTTAGTAAAACATCAAGAATTGCTTGCACTTGTTTGTATGGAGGGGCACCAAAGGGTCCTCAATTGAGAGATATTGACCGTGGAGCAGATATTGTGGTTGCCACACCTGGTCGCTTGAATGATATTCTTGAGATGAGGAGAATCAGTCTTCATCAGGTCTCTTACCTAGTCCTAGATGAGGCCGACAGGATGCTGGACATGGGTTTTGAACCTCAAATTAGGAAGATTGTGAATGGGGTGCCCGCTCGCAGGCAAACTCTTATGTTCACGGCGACTTGGCCTAAAGAGGTTAGGAAAATTGCAGCTGACCTGCTTGTCAATCCTGTCCAGGTGAACATTGGCAACGTAGATGAGCTTGTTGCTAACAAGTCCATTACTCAGCATATTGAAGTTTTGGCACATATGGAGAAACAGCGACGACTGGAAAGTATTTTGCGGTCACAGGATCAAGGATCAAAGATAATTATATTTTGTTCTACCAAGAAAATGTGTGACCAACTTGCTCGAAATCTCACACGCCAGTTTGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGATAGGGATCATGTGTTGAATCAGTTTCGAAGTGGAAGGACTCCTGTACTTGTAGCGACAGATGTTGCTGCTCGTGGACTGGACGTCAAAGACATTAGAGTGGTTGTCAACTTCGACTTCCCTACAGGAGTGGAGGATTATGTTCATAGGATCGGAAGGACTGGGAGGGCTGGAGCCACTGGTATAGCTTACACTTTCTTTGGGGACCAGGATGCTAAACATGCTTCAGATCTCATCAAAATCTTAGAGGGTGCAAACCAGAAAGTTCCTCCAGAACTTCGTGAACTGTCATCCAGGGGTGGTGGCGGGTTTGGCAAATCCAGACGATATGGTTCTGGTGGTCGTGGCGATTCTGGATTCGGTGCGAAGAGTTATGACTCTGGGTATGGTGGAAGGGGTAATGATTCAGGATATGGTGGAAGGGGTAGTGATTCAAGTTATGGAGGAAGGGGTGGAGGCCGTGGATTTGACTATGACTCACAGAGGAATGAACGAGATCGAAGCCCTGACAGGGGATCTAGCTGGAGTGATCGCTTCAAAACTCGTGAACGCAGCCGCAGTCCCGTCAAGGCTGCACCATCTCAATATAATGCCCCCGTCAGCTTTCATCAAGCAATGATGGAACGCAATGGAGGAGGCAGTGATCGCAACAAGAACTATAACCGGGAGCGAAGCCGCAGTCATAGTCCTTATAGACAGGACAAGGGAAAAAGTTCACCATCTACCAACAGTAGTCCTCAGAAAGGGTGGGGAGGATCTTCAGGTGTGGGAAGAAACGGTGGTTCTCATCCTTACAATGGAGAATTGGAGGAAGGGATGATTCCTGATGAAGAAGGAATGATAAGTCATGATGAATCTTCTATATATCAAAGTGCAAATTAG 2202 0.4659 MAATATAGPRYAPADPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPAAPPKPSSVPSSSVQVQQSSQGRCRSPDFSDRYDRNGNGGSDESGSRSYQSSKVGTFSSHNNVENGTHVAESVSSIKGHVASDTGPALTPEAYRRRHEITVTGDNVPPPVTSFASSGFPSEILREVQNAGFSAPTPIQAQSWPIALQSKDIVAIAKTGSGKTLGYLLPAFIHLKRTNNNAKMGPTILVLSPTRELATQIQDEAVKFSKTSRIACTCLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNGVPARRQTLMFTATWPKEVRKIAADLLVNPVQVNIGNVDELVANKSITQHIEVLAHMEKQRRLESILRSQDQGSKIIIFCSTKKMCDQLARNLTRQFGAAAIHGDKSQADRDHVLNQFRSGRTPVLVATDVAARGLDVKDIRVVVNFDFPTGVEDYVHRIGRTGRAGATGIAYTFFGDQDAKHASDLIKILEGANQKVPPELRELSSRGGGGFGKSRRYGSGGRGDSGFGAKSYDSGYGGRGNDSGYGGRGSDSSYGGRGGGRGFDYDSQRNERDRSPDRGSSWSDRFKTRERSRSPVKAAPSQYNAPVSFHQAMMERNGGGSDRNKNYNRERSRSHSPYRQDKGKSSPSTNSSPQKGWGGSSGVGRNGGSHPYNGELEEGMIPDEEGMISHDESSIYQSAN 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06221 733 Pfam WW domain 18 48 IPR001202 GO:0005515
Vifa1g06221 733 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 159 187 IPR014014 GO:0003724
Vifa1g06221 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 514 IPR027417 -
Vifa1g06221 733 MobiDBLite consensus disorder prediction 530 733 - -
Vifa1g06221 733 MobiDBLite consensus disorder prediction 597 627 - -
Vifa1g06221 733 MobiDBLite consensus disorder prediction 44 111 - -
Vifa1g06221 733 SMART helicmild6 418 498 IPR001650 -
Vifa1g06221 733 Gene3D - 136 368 IPR027417 -
Vifa1g06221 733 FunFam probable ATP-dependent RNA helicase DDX17 134 367 - -
Vifa1g06221 733 MobiDBLite consensus disorder prediction 674 692 - -
Vifa1g06221 733 Gene3D - 13 66 - -
Vifa1g06221 733 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 310 318 IPR000629 -
Vifa1g06221 733 ProSitePatterns WW/rsp5/WWP domain signature. 22 48 IPR001202 GO:0005515
Vifa1g06221 733 MobiDBLite consensus disorder prediction 1 23 - -
Vifa1g06221 733 SMART ww_5 17 50 IPR001202 GO:0005515
Vifa1g06221 733 Pfam Helicase conserved C-terminal domain 390 498 IPR001650 -
Vifa1g06221 733 CDD SF2_C_DEAD 378 507 - -
Vifa1g06221 733 SUPERFAMILY WW domain 10 51 IPR036020 GO:0005515
Vifa1g06221 733 MobiDBLite consensus disorder prediction 56 74 - -
Vifa1g06221 733 Gene3D - 369 539 IPR027417 -
Vifa1g06221 733 MobiDBLite consensus disorder prediction 655 673 - -
Vifa1g06221 733 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 537 IPR001650 -
Vifa1g06221 733 Pfam DEAD/DEAH box helicase 183 353 IPR011545 GO:0003676|GO:0005524
Vifa1g06221 733 MobiDBLite consensus disorder prediction 87 111 - -
Vifa1g06221 733 CDD WW 19 48 IPR001202 GO:0005515
Vifa1g06221 733 FunFam ATP-dependent RNA helicase RhlB 368 540 - -
Vifa1g06221 733 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 190 364 IPR014001 -
Vifa1g06221 733 SMART ultradead3 178 381 IPR014001 -
Vifa1g06221 733 ProSiteProfiles WW/rsp5/WWP domain profile. 16 50 IPR001202 GO:0005515
Vifa1g06221 733 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 117 537 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06221 Vifa-Chr1 973230933 973235231 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06221 157 536 Eukaryotic Initiation Factors Gene Family AT3G19760 33.159 2.10e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06221 K12823 - gmx:100786511 1046.96