Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06218 ATGGATCCAAATCTGCAAAGGGAATGGTCCTTCAATGACTTCGAGATCGGAAAGCCACTCGGGAAAGGAAAGTTCGGCCGAGTCTACGTCGCCAGAGAAGTCAAGAGTAAATTTGTGGTTGCATTGAAGGTTATATATAAGGAACAAATTGAAAAGTATAAACTTCACCATCAACTGAGGAGAGAAGTGGAGATACAGATAATTCTTAAACATCCGAACATCTTGCGTCTCTATGGTTGGTTTCATGATTCCGAGCGCGTTGTCTTGATTCTTGAATATGCTCATAATGGTGAGCTATACAAGGAGCTTAGCAAAAGACATCATTTCTCCGAGAAGGAAGCTGCAACGTACATTTTATGCCTCACAGAGGCATTAGCATATTGTCACGAGAAGCATGTTATTCACAGGGATATCAAGCCTGAAAATTTATTGCTCGACCATGAGGGTCGTCTTAAGATTGCAGACTTTGGTTGGTCGGTACAATCTAAAATGAAAAGACAAACCATGTGTGGGACATTGGACTATTTAGCTCCTGAAATGGTAGAAAACAAAGGTCATGATTATGCTGTTGATAACTGGACTCTGGGTATCCTTTGTTACGAGTTCCTTTATGGTGCTCCTCCATTTGAGGCGGAGAGTCAAATTGATACCTTCCAAAGGATAAAAAATGTTGATTTGATCTTTCCTCCTAGCCCTCTTGTTTCTTCGGATGCCAAAAACCTTATAAGACGGCTCCTGGTGAAAGATTCCTCAAGAAGGATCTCACTCCAGAAGATAATGGAGCATCCTTGGATAATCAAGAATGCAAATAGTATCGGTGACTACGCGTAG 831 0.414 MDPNLQREWSFNDFEIGKPLGKGKFGRVYVAREVKSKFVVALKVIYKEQIEKYKLHHQLRREVEIQIILKHPNILRLYGWFHDSERVVLILEYAHNGELYKELSKRHHFSEKEAATYILCLTEALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSKMKRQTMCGTLDYLAPEMVENKGHDYAVDNWTLGILCYEFLYGAPPFEAESQIDTFQRIKNVDLIFPPSPLVSSDAKNLIRRLLVKDSSRRISLQKIMEHPWIIKNANSIGDYA 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06218 276 CDD STKc_Aurora 13 265 - -
Vifa1g06218 276 FunFam Serine/threonine-protein kinase ark1 6 275 - -
Vifa1g06218 276 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Vifa1g06218 276 PIRSF ILK 2 270 - -
Vifa1g06218 276 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vifa1g06218 276 Gene3D Transferase(Phosphotransferase) domain 1 98 274 - -
Vifa1g06218 276 SUPERFAMILY Protein kinase-like (PK-like) 7 268 IPR011009 -
Vifa1g06218 276 Gene3D Phosphorylase Kinase; domain 1 3 97 - -
Vifa1g06218 276 SMART serkin_6 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06218 276 FunFam Aurora kinase A 6 97 - -
Vifa1g06218 276 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 6 270 IPR030616 GO:0004672
Vifa1g06218 276 Pfam Protein kinase domain 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06218 276 ProSiteProfiles Protein kinase domain profile. 14 265 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06218 Vifa-Chr1 972250937 972256970 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06218 6 268 CBL-interacting serine-threonine protein kinases AT5G10930 40.000 3.71e-61 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Vifa1g06218 Pkinase 3.1e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06218 K08850 - gmx:100775802 483.026