Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06214 ATGGCTCCGAAGCAGCAAAGTACTGGTCTTTTTGTAGGATTGAACAAGGGTCATGTTGTTACCAAGAAGGAGTTGGCTACACGACCCTCCAGTCGTAAAGGGAAAACTAGCAAGCAGGTCCATTTTGTGAGGAATCTCATCCGTGAGGTTGCAGGTTTTGCGCCTTACGAAAAGCGTATAACTGAGTTATTGAAGGTTGGAAAAGACAATAGGGCACTTAAAGTTGCCAAGAGAAAGCTTGAAACCCATAAACGCGCAAAGAAGAAGCGCGAGGAGATGTCTAATATTCTTAGAAAGGGAGCGGTGGTGTGGTGTAGCTCGTTCGACATAAGTGGGTTGGAATCGTTTGCTTTAGAAGTCATTTCAGATGGATTTTTTAGCGTGAGATGA 390 0.4436 MAPKQQSTGLFVGLNKGHVVTKKELATRPSSRKGKTSKQVHFVRNLIREVAGFAPYEKRITELLKVGKDNRALKVAKRKLETHKRAKKKREEMSNILRKGAVVWCSSFDISGLESFALEVISDGFFSVR 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06214 129 Coils Coil 73 93 - -
Vifa1g06214 129 PANTHER 60S RIBOSOMAL PROTEIN L36 1 99 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vifa1g06214 129 FunFam 60S ribosomal protein L36 1 103 - -
Vifa1g06214 129 Gene3D 60S ribosomal protein L36 1 103 IPR038097 -
Vifa1g06214 129 Pfam Ribosomal protein L36e 8 99 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vifa1g06214 129 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06214 Vifa-Chr1 971331280 971331669 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06214 1 99 Cytoplasmic Ribosomal Protein Gene Family AT3G53740 79.798 5.00e-51 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06214 K02920 - cave:132189827 181.8