Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06209 ATGCCTCCAAATTTCATAGCACCAAAACCTCAACAATACCTCAATAGTTCTACTCTCTCTTTGGAAGGATCACCACATAATGAACAATCATTACCAAAACTCATTATGCATCCCATAACTTTGAAGTTTGAGGATTTGGAATACAAAGTGAAAGTAAACCAAAAAGAAAAAACTATACTAAATGGAATCACAGGAGTGGTGTGTCCAGGAGAAATACTAGCTATGTTAGGTCCATCAGGCAGTGGCAAAACAACACTCCTCACGGCTCTCGGAGGCCGTCTTGCTGGTAAGCTATCAGGAAAAGTCACCTACAACAATCAAACTTTTTCAGGTTTGATAAAAAGAAGAACAGGTTTTGTTGCTCAAGATGATGTTCTTTACCCTCATCTAACCGTAACCGAAACTCTAGTGTTCACTGCACTTTTGAGGCTTCCACAAACCTTAACAAGAGATGAAAAAGTTGAGCATGTGGAGAGAGTTATAACTGAGTTAGGACTAAGTAACTGTAGGAATAGTATGATTGGAGGACCACTTTTGAGAGGTATATCAGGTGGTGAGAAAAGGAGAGTGAGTATAGGACAGGAAATGTTGATTAATCCGAGTTTGTTGTTGCTTGATGAACCTACTTCTGGTTTGGATTCTACCACAGCGCTAAGGATCTTGAACACTATCAAAAAACTTGCTAGTGGTGGTTGTCCTATATATTACGGTCCTGCTTCAACCGCTCTTGACTATTTCTCATCGCTCGGTTTTTCTACTTGCGTGACTGTTAATCCTGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGGTCCGGAATCTAAGCATGTAACTGAACAAAGTGAGGCTTTGGAAATTGAGAGGAAGAATGTGAGAGAGACTCTCATTTCTGCTTATGACAGGAACTTAGCTTCAAAGCTGAAAGCTGAGATTTCTAGCATGGAAGAGAACAATTTTGATGCTTGCACAAAGATTCAGATAAAACCAGAACAATGGTGTACAAGCTGGTGGTATCAGTTCACTGTATTATTGCAAAGAGGAGTGAAGGAAAGAAGGCATGAAGCCTTCAATAAGCTGAGAATTTTTCAAGTCGTAAGCGTAGCGTTTCTCGCTGGACTCTTATGGTGGCATACACCTAAATCACACCTTACAGATAGGATAGCTTTGCTCTTTTTCTTTGCTGTTTTCTGGGGATTCTACCCTCTGTACAACGCGGTTTTCACATTTCCACAAGAGAGAAGAATGCTAATCAAGGAACGTTCATCGGGAATGTACCGTCTCTCATCGTACTTTCTAGCAAGAACAATAGGAGACTTACCACTCGAACTCGCTCTTCCAACCGCCTTTGTGATCATATTATACTGGATGGGAGGACTCAAACCTGATTTCATGACTTTCATTCTTTCACTTCTTGTTGTTCTTTACAGTGTTGTGGTATCTCAAAGTCTTGGATTAGCATTTGGTGCTATTCTGATGGATATTAAACAGGCAACTACACTAGCTTCTGTGACAACGCTTGTTTTTCTCATTGCTGGAGGATACTATATACAACAAATTCCACCTTTTATAGTTTGGCTTAAGTACTTAAGCTATAGCTACTACTGTTACAAGCTTCTTCTCGGTGTACAATACGGTGAAAATGATTATTATCAATGCTCAAATGGCGAGATGTGCAAGGTTTTGGACTTTCCTCCGATTAAATCGATGGGATTGAATCATATGTGGGTCGATGTGTCCGTCATGGCGTTGATGTTGGTTGGTTATAGACTAGTTGCTTATTTTGCACTTCATAGAGTTAGGTAA 1803 0.4016 MPPNFIAPKPQQYLNSSTLSLEGSPHNEQSLPKLIMHPITLKFEDLEYKVKVNQKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLAGKLSGKVTYNNQTFSGLIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPQTLTRDEKVEHVERVITELGLSNCRNSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKKLASGGCPIYYGPASTALDYFSSLGFSTCVTVNPADLLLDLANGIGPESKHVTEQSEALEIERKNVRETLISAYDRNLASKLKAEISSMEENNFDACTKIQIKPEQWCTSWWYQFTVLLQRGVKERRHEAFNKLRIFQVVSVAFLAGLLWWHTPKSHLTDRIALLFFFAVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVIILYWMGGLKPDFMTFILSLLVVLYSVVVSQSLGLAFGAILMDIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYGENDYYQCSNGEMCKVLDFPPIKSMGLNHMWVDVSVMALMLVGYRLVAYFALHRVR 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06209 600 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 232 IPR027417 -
Vifa1g06209 600 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Vifa1g06209 600 Pfam ABC-2 type transporter 218 287 IPR043926 GO:0140359
Vifa1g06209 600 SMART AAA_5 69 240 IPR003593 GO:0016887
Vifa1g06209 600 Gene3D - 40 236 IPR027417 -
Vifa1g06209 600 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 229 592 - -
Vifa1g06209 600 Pfam ABC-2 type transporter 338 544 IPR013525 GO:0016020|GO:0140359
Vifa1g06209 600 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 293 IPR003439 GO:0005524
Vifa1g06209 600 Pfam ABC transporter 61 210 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06209 Vifa-Chr1 970393009 970395662 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06209 31 234 Calmodulin-binding Proteins AT2G36910 22.857 6.49e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06209 K05681 - gmx:100794774 964.911