Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06208 ATGCCTCCAAATTTCATAGCACCAAAACCTCAACAATACCTCAATAGTTCTACTCTCTCTTTGGAAGGATCACCACATAATGAACAATCATTACCAAAACTCATTATGCATCCCATAACTTTGAAGTTTGAGGATTTGGAATACAAAGTGAAAGTAAACCAAAAAGAAAAAACTATACTAAATGGAATCACAGGAGTGGTGTGTCCAGGAGAAATACTAGCTATGTTAGGTCCATCAGGCAGTGGCAAAACAACACTCCTCACGGCTCTCGGAGGCCGTCTTGCTGGTAAGCTATCAGGAAAAGTCACCTACAACAATCAAACTTTTTCAGGTTTGATAAAAAGAAGAACAGGTTTTGTTGCTCAAGATGATGTTCTTTACCCTCATCTAACCGTAACCGAAACTCTAGTGTTCACTGCACTTTTGAGGCTTCCACAAACCTTAACAAGAGATGAAAAAGTTGAGCATGTGGAGAGAGTTATAACTGAGTTAGGACTAAGTAACTGTAGGAATAGTATGATTGGAGGACCACTTTTGAGAGGTATATCAGGTGGTGAGAAAAGGAGAGTGAGTATAGGACAGGAAATGTTGATTAATCCGAGTTTGTTGTTGCTTGATGAACCTACTTCTGGTTTGGATTCTACCACAGCGCTAAGGATCTTGAACACTATCAAAAAACTTGCTAGTGGTGGTAGAACTGTTGTTACAACAATTCATCAACCTTCTAGTAGACTCTATTACATGTTTGATAAGGTTGTGTTGCTCTCTGAAGGTTGTCCTATATATTACGGTCCTGCTTCAACCGCTCTTGACTATTTCTCATCGCTCGGTTTTTCTACTTGCGTGACTGTTAATCCTGCTGATCTCTTGCTTGATCTTGCCAATGGGATTGGTCCGGAATCTAAGCATGTAACTGAACAAAGTGAGGCTTTGGAAATTGAGAGGAAGAATGTGAGAGAGACTCTCATTTCTGCTTATGACAGGAACTTAGCTTCAAAGCTGAAAGCTGAGATTTCTAGCATGGAAGAGAACAATTTTGATGCTTGCACAAAGATTCAGATAAAACCAGAACAATGGTGTACAAGCTGGTGGTATCAGTTCACTGTATTATTGCAAAGAGGAGTGAAGGAAAGAAGGCATGAAGCCTTCAATAAGCTGAGAATTTTTCAAGTCGTAAGCGTAGCGTTTCTCGCTGGACTCTTATGGTGGCATACACCTAAATCACACCTTACAGATAGGATAGCTTTGCTCTTTTTCTTTGCTGTTTTCTGGGGATTCTACCCTCTGTACAACGCGGTTTTCACATTTCCACAAGAGAGAAGAATGCTAATCAAGGAACGTTCATCGGGAATGTACCGTCTCTCATCGTACTTTCTAGCAAGAACAATAGGAGACTTACCACTCGAACTCGCTCTTCCAACCGCCTTTGTGATCATATTATACTGGATGGGAGGACTCAAACCTGATTTCATGACTTTCATTCTTTCACTTCTTGTTGTTCTTTACAGTGTTGTGGTATCTCAAAGTCTTGGATTAGCATTTGGTGCTATTCTGATGGATATTAAACAGGCAACTACACTAGCTTCTGTGACAACGCTTGTTTTTCTCATTGCTGGAGGATACTATATACAACAAATTCCACCTTTTATAGTTTGGCTTAAGTACTTAAGCTATAGCTACTACTGTTACAAGCTTCTTCTCGGTGTACAATACGGTGAAAATGATTATTATCAATGCTCAAATGGCGAGATGTGCAAGGTTTTGGACTTTCCTCCGATTAAATCGATGGGATTGAATCATATGTGGGTCGATGTGTCCGTCATGGCGTTGATGTTGGTTGGTTATAGACTAGTTGCTTATTTTGCACTTCATAGAGTTAGGTAA 1884 0.3997 MPPNFIAPKPQQYLNSSTLSLEGSPHNEQSLPKLIMHPITLKFEDLEYKVKVNQKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLAGKLSGKVTYNNQTFSGLIKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPQTLTRDEKVEHVERVITELGLSNCRNSMIGGPLLRGISGGEKRRVSIGQEMLINPSLLLLDEPTSGLDSTTALRILNTIKKLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGCPIYYGPASTALDYFSSLGFSTCVTVNPADLLLDLANGIGPESKHVTEQSEALEIERKNVRETLISAYDRNLASKLKAEISSMEENNFDACTKIQIKPEQWCTSWWYQFTVLLQRGVKERRHEAFNKLRIFQVVSVAFLAGLLWWHTPKSHLTDRIALLFFFAVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVIILYWMGGLKPDFMTFILSLLVVLYSVVVSQSLGLAFGAILMDIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYGENDYYQCSNGEMCKVLDFPPIKSMGLNHMWVDVSVMALMLVGYRLVAYFALHRVR 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06208 627 CDD ABCG_EPDR 38 264 - -
Vifa1g06208 627 ProSitePatterns ABC transporters family signature. 182 196 IPR017871 GO:0005524|GO:0016887
Vifa1g06208 627 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 26 619 - -
Vifa1g06208 627 Pfam ABC transporter 61 210 IPR003439 GO:0005524
Vifa1g06208 627 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 41 282 IPR003439 GO:0005524
Vifa1g06208 627 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 274 IPR027417 -
Vifa1g06208 627 Gene3D - 40 276 IPR027417 -
Vifa1g06208 627 FunFam ABC transporter G family member 22 47 276 - -
Vifa1g06208 627 SMART AAA_5 69 259 IPR003593 GO:0016887
Vifa1g06208 627 Pfam ABC-2 type transporter 239 311 IPR043926 GO:0140359
Vifa1g06208 627 Pfam ABC-2 type transporter 365 571 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06208 Vifa-Chr1 970393009 970395662 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06208 39 258 Calmodulin-binding Proteins AT2G36910 30.131 3.91e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06208 K05681 - gmx:100794774 1031.94