Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06201 ATGGACAAAAAACCCTGCAACTCATCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACCATGGAAGAAGACTTGATTTTGATCAATTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCCTTAGCCAAAGCTGCTGGTCTTAAACGTACAGGAAAGAGTTGCAGGCTTCGATGGTTAAACTACCTTCGTCCTGATGTTAGAAGAGGAAATATTACCCCTGAGGAACAACTTTTGATCATGGAACTTCATGCAAAGTGGGGAAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACTGACAATGAGATTAAGAATTTTTGGAGGACTAGGATACAAAAGCACATTAAGCAAGTTGATAACCCTAATCAACAGAATTTTCAACAAAATATGAGTTTAGAGATAAATGATCATCATCATCATCATCAACAACAACCAAGTAGTAGCCAAGTTTCTACTTTGATAGAGCCAATCGAAACTTATTCTCCAACTTCATATCAAGGAACTATGGAGCCATTTCCAACTCCATTTCCAACTATCAATGATCATCATCAAAACTCAAATTGTTGTGCCAATGAAAACAATACCAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAATTACTCAATGGAGATTAA 651 0.3748 MDKKPCNSSQDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHIKQVDNPNQQNFQQNMSLEINDHHHHHQQQPSSSQVSTLIEPIETYSPTSYQGTMEPFPTPFPTINDHHQNSNCCANENNTNNYWSMEDIWSMQLLNGD 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06201 216 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 183 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vifa1g06201 216 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Vifa1g06201 216 SMART sant 15 65 IPR001005 -
Vifa1g06201 216 SMART sant 68 116 IPR001005 -
Vifa1g06201 216 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Vifa1g06201 216 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Vifa1g06201 216 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Vifa1g06201 216 Gene3D - 16 68 - -
Vifa1g06201 216 FunFam Myb-related protein 305 73 153 - -
Vifa1g06201 216 CDD SANT 73 112 IPR001005 -
Vifa1g06201 216 FunFam Myb transcription factor 16 68 - -
Vifa1g06201 216 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Vifa1g06201 216 Gene3D - 73 151 - -
Vifa1g06201 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Vifa1g06201 216 CDD SANT 18 63 IPR001005 -
Vifa1g06201 216 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06201 Vifa-Chr1 969264193 969268608 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06201 4 216 MYB Transcription Factor Family AT3G01530 58.065 1.49e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g06201 Myb_DNA-binding 7.5e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06201 K09422 - gmx:778048 338.191