Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06191 ATGGAAGTAAGTACCATGTTATGTTTTTTGTTTAGTTCTATTCTCTTCATTGTTCTTTTCAGAATATTCATCAAACAATTTGTCTCCAAAAGACAACACTTGCCACTTCCACCTGGTTCAATGGGTTATCCTTACATAGGAGAAACTTTTCAACTTTATTCTCAAGACCCAAATGTTTTCTTTGCATCAAAAATCAAAAGGTATGGTTCTATGTTCAAGTCTCACATTTTGGGGTGTCCTTGTGTCATGATTTCAAGCCCTGAAGCTGCTAAATTTGTGTTGAATAAAGCTCAACTTTTCAAGCCAACATTTCCAGCTAGCAAAGAGAGGATGTTGGGAAAACAAGCTATCTTTTTTCATCAAGGAGAGTATCATGCTAACTTGAGAAGACTTGTTCTTCGAACTTTCATGCCGGAAGCTATCAAGAATATTGTTCCTGACATTGAATCCATTGCTGAGGATTCTCTTAAGTCATTGGAAGGACGTTTAATCACCACTTTCCTTGAAATGAAAACCTTCACATTCAATGTTGCTCTACTTTCAATTTTCGGAAAAGATGAAATTCACTACAGAGAGCGTTTGAAGCAGTGTTACTACACACTTGAGAAAGGTTACAATTCAATGCCGATAAACCTTCCAGGAACACTCTTTCACAAAGCTATGAAAGCAAGGAAAGAGCTAGCACAGATCTTGGCTGAGATAATCTCAAGTAGGAGAGAGAAGAAACAAGATTTCAAAGACTTGTTAGGTTCATTCATGGATGAAAAATCAGGACTCAGTGATGAACAGATAGCAGATAATGTGATTGGAGTTATTTTTGCAGCTCGTGATACCACAGCTAGTGTGCTTACATGGATTGTGAAGTACCTTGGTGAAAATATCAATGTTCTTGAATCAGTGATTGAGGAACAAGAATATATATTGAGGAACAAGGAAGAAAATGGTGAAGAAAAAGGTCTTAAATGGGAAGATACTAAGAAGATGGTTATAACTTCTAGGGTTATTCAAGAGACTCTTAGAGTTGCTTCAATTTTGTCTTTCACTTTTAGAGAAGCCGTTGAAGATGTTGAATATCAAGGGTATCTTATACCAAAAGGGTGGAAAGTATTGCCTTTATTTAGGAATATACACCATAGTCCAAACAACTTTAAGGATCCAGAAAAGTTTGATCCTTCAAGATTTGAGACTGCTACAAAACCCAATACTTTTATGCCATTTGGAAGTGGAGTCCATGCATGTCCCGGCAATGAATTAGCCAAGTTGGAGATTTTGGTCCTTTTACATCATCTCACCACAAAATACAGGTGGTCTGTGGAAGGTACAAAGGATGGGATTCAATATGGTCCCTTTGCTCTTCCCCAAAATGGATTGCCCATCACACTATATCCAAAAAAATAG 1398 0.3712 MEVSTMLCFLFSSILFIVLFRIFIKQFVSKRQHLPLPPGSMGYPYIGETFQLYSQDPNVFFASKIKRYGSMFKSHILGCPCVMISSPEAAKFVLNKAQLFKPTFPASKERMLGKQAIFFHQGEYHANLRRLVLRTFMPEAIKNIVPDIESIAEDSLKSLEGRLITTFLEMKTFTFNVALLSIFGKDEIHYRERLKQCYYTLEKGYNSMPINLPGTLFHKAMKARKELAQILAEIISSRREKKQDFKDLLGSFMDEKSGLSDEQIADNVIGVIFAARDTTASVLTWIVKYLGENINVLESVIEEQEYILRNKEENGEEKGLKWEDTKKMVITSRVIQETLRVASILSFTFREAVEDVEYQGYLIPKGWKVLPLFRNIHHSPNNFKDPEKFDPSRFETATKPNTFMPFGSGVHACPGNELAKLEILVLLHHLTTKYRWSVEGTKDGIQYGPFALPQNGLPITLYPKK 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06191 465 Gene3D Cytochrome P450 26 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS P450 superfamily signature 404 413 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS P450 superfamily signature 413 424 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS P450 superfamily signature 333 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS P450 superfamily signature 274 291 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 Coils Coil 294 314 - -
Vifa1g06191 465 SUPERFAMILY Cytochrome P450 31 463 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PANTHER CYTOCHROME P450 26 32 438 - -
Vifa1g06191 465 CDD CYP90-like 65 463 - -
Vifa1g06191 465 PRINTS E-class P450 group I signature 332 350 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS E-class P450 group I signature 372 396 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS E-class P450 group I signature 403 413 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS E-class P450 group I signature 283 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS E-class P450 group I signature 413 436 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 PRINTS E-class P450 group I signature 263 280 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g06191 465 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 406 415 IPR017972 GO:0005506|GO:0016705
Vifa1g06191 465 FunFam Abscisic acid 8 26 463 - -
Vifa1g06191 465 Pfam Cytochrome P450 37 455 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06191 Vifa-Chr1 967970372 967972744 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06191 1 459 Cytochrome P450 AT4G19230 70.499 0.0 675
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06191 K09843 - gmx:100170674 808.135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g06191 1 967970372 967972744 Vifa1g06191 1 967970372 967972744 ECH