Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06183 ATGAGGGAAAAACTTGATCAGTGGCTCTGTAGACAGCAAGAGGGTGGATCAAGACTTGCAAACTTTGATATAATTAACTACATTCAGGTAATATATGCTAAAATGGAAATAGAGTTGTCGTATAATGACTTGGTTGAAAAGAGAAGAGCCAGACATTCAGATATTGAATCCAGTTCATCTTCAAAGACTACCGGTGGTTTGGGAATGTATTGGTGGAGAGGTGGTAGGCTTTCTCGAAAGTTGTTTAATTGCAAGGTCCTTCCTCGTTCCTTTGTTACCAAGGCTGCTAGACAAGCTGGGTTTAGAAAGATACCAGGTATTTTATATCCTGAAAATTCAGACTTTGCTAAGAGAAGCAGATGTGTTGCCTGGCGAGCTGCTGTTGAGATGTCAACAAGCGTTGATCAGCTGGCTTTACAGGTTAGAGAACTCTACTCAAACATAAGGTGGCATGATATTGAGAATAACCATCCTCTACATGCTACTGCCTTATACAAATTAGTTGCGGAACGAGGTCCATGGAGCTCTTTGTCCAGATGGGCACTGGAAGCATACTTAAAAGGTGATGTTGGCAAGGCATATATGTTGTATTCAAGAATGGCCGAGATGGGCTATGAGGTGGCACAAAGTAATGCTGCTTGGATTCTTGATAAATATGGAGAACGAAGCATGTGCATGGGTGAATCTGGACTTTGCACTGATGCAGAAAGGCATCAGCGGGCACACTCTTTGTGGTGGAAAGCTTCTGAGCAGGGTAACGAACATGCTGCTTTACTAATTGGAGACGCATATTACTATGGCAGGGGAACTGTCAGGGATTATGACCGAGCTGCTGAGGCTTACATGCATGCCAAATCGCAATCTAATGCACATGCCATGTTTAATCTTGGGTACATGCATGAGTATGGCCAAGGACTTCCCCTTGACCTTCATCTAGCCAAGCGTTACTATGATGAAGCTTTAGTGCATGATCCTACAGCTAAGTTGCCAGTTACACTGGCACTTACAAGCCTGTGGGTTCGGATGAACCATGCTGACAGTATATTGGTCCAAATAATTGACTCTTTGCCAGATGTCTATCCAAAATTAGAAGCTTGGGTGGAGAATGTGCTTTTGGAGGAGGGAAATGCCACAATTCTAACCCTCTTTGCATGCCTCCTAACTGTGTTGTATCTGCGCGAAAGGCAAAGACGACAAGCTGCTGTTGTAGTTGGCGAGGTCGCTCAGCCAAATCTCCCTAACGAGCTTGCTATGCCAGCACCCATGAGATAG 1272 0.4426 MREKLDQWLCRQQEGGSRLANFDIINYIQVIYAKMEIELSYNDLVEKRRARHSDIESSSSSKTTGGLGMYWWRGGRLSRKLFNCKVLPRSFVTKAARQAGFRKIPGILYPENSDFAKRSRCVAWRAAVEMSTSVDQLALQVRELYSNIRWHDIENNHPLHATALYKLVAERGPWSSLSRWALEAYLKGDVGKAYMLYSRMAEMGYEVAQSNAAWILDKYGERSMCMGESGLCTDAERHQRAHSLWWKASEQGNEHAALLIGDAYYYGRGTVRDYDRAAEAYMHAKSQSNAHAMFNLGYMHEYGQGLPLDLHLAKRYYDEALVHDPTAKLPVTLALTSLWVRMNHADSILVQIIDSLPDVYPKLEAWVENVLLEEGNATILTLFACLLTVLYLRERQRRQAAVVVGEVAQPNLPNELAMPAPMR 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06183 423 Gene3D Tetratricopeptide repeat domain 122 346 IPR011990 GO:0005515
Vifa1g06183 423 PANTHER ERAD-ASSOCIATED E3 UBIQUITIN-PROTEIN LIGASE COMPONENT HRD3A-RELATED 160 404 IPR044623 GO:0030433
Vifa1g06183 423 SMART sel1 290 325 IPR006597 -
Vifa1g06183 423 SMART sel1 254 289 IPR006597 -
Vifa1g06183 423 Pfam Sel1 repeat 187 205 IPR006597 -
Vifa1g06183 423 Pfam Sel1 repeat 256 278 IPR006597 -
Vifa1g06183 423 Pfam Sel1 repeat 290 320 IPR006597 -
Vifa1g06183 423 SUPERFAMILY HCP-like 185 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06183 Vifa-Chr1 967320809 967326326 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06183 45 159 PHD Transcription Factor Family AT5G12400 60.000 1.78e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06183 K14026 - gmx:732556 473.396