Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06172 ATGGGAACACGGCCGCAGCAATCGCGTGTAGATGAAGAGGACGATGAACTGCTCGGTTGTGGAACGACGATTTCCGGCCAATCAGGCTCCACAAGCCGGAGTGCTGGGTTGGGGACCACCGCTGGTGATAGCGCTGCTCTCAAATTGAATCACCTTGACATACACGACGATGATGCTGCATCACAGGGAGTAGTTGCAAGCAAGAAGAAAAAGAGAGGCCAACGAGCTGTTGGGGGTGATAAGAGTGGAAGAGGGCTTCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTAGAAAGTAGAGGAAGAACAACTTACAATGAGGTGGCAGATGAGCTTGTGGCTGAGTTTTCTGATCCAAGCAATAGTGTCTTGACCCCTGATCAGCAACAATATGATGAGAAAAACATCCGTCGAAGGGTCTATGATGCTCTGAATGTTCTCATGGCTATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAAGGTCTTCCTCGTACCAGTCAGAGTGATATTGAAGAACTAAAGACAGAGCGTCTTGGGCGCAGGAATAGAATTGAAAGGAAAACAGCCTATCTGAAGGAGCTTGAGGAGCAATTTGTAGGTCTTCAGAAACTTATCCAACGAAATGAGCAAATATGTAGCTCAGGAAATCCTCCCAGTGGAGGTGTATCGTTACCTTTTATTCTCGTACAGACACGTCCTCATGCAACTGTTGAAGTGGAAATATCAGAAGACATGCAGCTTGTTCATTTTGATTTCAACAGGTAA 774 0.4535 MGTRPQQSRVDEEDDELLGCGTTISGQSGSTSRSAGLGTTAGDSAALKLNHLDIHDDDAASQGVVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESRGRTTYNEVADELVAEFSDPSNSVLTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSQSDIEELKTERLGRRNRIERKTAYLKELEEQFVGLQKLIQRNEQICSSGNPPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNR 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06172 257 SMART DP_2 171 257 IPR014889 -
Vifa1g06172 257 Gene3D - 76 169 IPR036388 -
Vifa1g06172 257 Coils Coil 194 214 - -
Vifa1g06172 257 SMART E2F_TDP_2 81 164 IPR003316 GO:0005667|GO:0006355
Vifa1g06172 257 SUPERFAMILY "Winged helix" DNA-binding domain 84 165 IPR036390 -
Vifa1g06172 257 MobiDBLite consensus disorder prediction 21 39 - -
Vifa1g06172 257 MobiDBLite consensus disorder prediction 1 41 - -
Vifa1g06172 257 Gene3D Transcription factor DP 170 257 IPR038168 -
Vifa1g06172 257 PANTHER TRANSCRIPTION FACTOR DP 39 256 IPR015648 GO:0005667|GO:0051726
Vifa1g06172 257 Pfam Transcription factor DP 172 257 IPR014889 -
Vifa1g06172 257 PIRSF Txn_factor_DP 13 257 IPR015648 GO:0005667|GO:0051726
Vifa1g06172 257 MobiDBLite consensus disorder prediction 60 84 - -
Vifa1g06172 257 FunFam Transcription factor-like protein DPB 76 169 - -
Vifa1g06172 257 CDD DP_DD 169 257 IPR014889 -
Vifa1g06172 257 Pfam E2F/DP family winged-helix DNA-binding domain 84 164 IPR003316 GO:0005667|GO:0006355
Vifa1g06172 257 SUPERFAMILY E2F-DP heterodimerization region 171 256 IPR037241 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06172 Vifa-Chr1 965054002 965056704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06172 82 256 E2F-DP Transcription Factor Family AT5G02470 53.977 7.55e-67 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Vifa1g06172 DP 9.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06172 K04683 - gmx:100781272 414.461