Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06166 ATGACTATCTTTTGGAAGAAGGGAACAATAAAAATACCATCTTTTGATTCACCAATAACTGATCAGATGGTTAAGGTTTCGTACCAAAACCTATACAGGGCAATTGATGGATTCTCAACAAGCAACTTGATAGGATCTGGAAATCTTAGTTCTGTCTACAAAGGAACACTTGAGTCGATAGACGGAGTTGTTGCAATAAAAGTCCTAAACCTTACAAAGAAGGGAGCTCACAAGAGTTTCATTGGTGAATGTAATTCACTAAAAAATATTAGACACCAGAATCTGGTTAAAATTCTGACATGTTGTTCCAGCACAGATTATAAAGGCGATGAGTTTAAAGCTCATGCATTTGAGTACATGAGAAATGGAAACTTAGAAAGTTGGTTGCATCCGACAACAGAAATGATAGATGAGCCCAAATCATTAAATCTAGAGCAAAGGTTCAACATTATTATTGATGTTGCATCAGCGTTTTGTTATCTTCACTATGAATGCGAGCAACCTGTCATTCATTGTGATTTAAAGCCTGCAAATGTTCTTCCTAATGACTCCCTGGTAGCACAAGTCTCAAGTGTTAGTATCTCTCTAAAGCAAAGTAGCACAATTGGAGTAATGGAGACAGTTGGCTATGCACCCCTAGTGTATGGAATGGGTTCGGAAGTGTCAATTGAAGGCGACATGTATAGCTTTGGAATAATGGTATTAGAAATGTTAATCGGAAGGAGACCCACAGATGAAATGTTTAAAGATGATCATAATCTCCATAATTATGTGAAACTCTCAATTCCAAATCGCCTTTTCCAGATTGTGGACCGGATTGCACTTTCTTGTTCAGTGGAATCACCAAAAGAAAGAAAGAATATGGTGGATGTTATAAGGGAACTCAACATCATTAAAAGTTTCTTTCCTACTGAGGTTCAACGAAGGCAAGGTGCATTACAACCACAAATCACATGTAGAGGTATTGCTATCATCCATTGCTATCATCCATTGCTGTCAAACCATGTCATTCTATGCTTTATTATCCTTAAATGTACTATTGAGTATGATTTCTAA 1056 0.3693 MTIFWKKGTIKIPSFDSPITDQMVKVSYQNLYRAIDGFSTSNLIGSGNLSSVYKGTLESIDGVVAIKVLNLTKKGAHKSFIGECNSLKNIRHQNLVKILTCCSSTDYKGDEFKAHAFEYMRNGNLESWLHPTTEMIDEPKSLNLEQRFNIIIDVASAFCYLHYECEQPVIHCDLKPANVLPNDSLVAQVSSVSISLKQSSTIGVMETVGYAPLVYGMGSEVSIEGDMYSFGIMVLEMLIGRRPTDEMFKDDHNLHNYVKLSIPNRLFQIVDRIALSCSVESPKERKNMVDVIRELNIIKSFFPTEVQRRQGALQPQITCRGIAIIHCYHPLLSNHVILCFIILKCTIEYDF 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06166 351 SMART serkin_6 38 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06166 351 ProSiteProfiles Protein kinase domain profile. 38 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06166 351 Gene3D Phosphorylase Kinase; domain 1 18 109 - -
Vifa1g06166 351 Pfam Protein tyrosine and serine/threonine kinase 41 295 IPR001245 GO:0004672|GO:0006468
Vifa1g06166 351 FunFam LRR receptor-like serine/threonine-protein kinase EFR 11 119 - -
Vifa1g06166 351 Gene3D Transferase(Phosphotransferase) domain 1 120 313 - -
Vifa1g06166 351 SUPERFAMILY Protein kinase-like (PK-like) 18 297 IPR011009 -
Vifa1g06166 351 PANTHER OS04G0122200 PROTEIN 16 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06166 Vifa-Chr1 963585411 963591198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06166 25 310 Receptor kinase-like Gene Family AT3G47580 43.478 6.28e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06166 PK_Tyr_Ser-Thr 2.8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06166 - - gmx:100792724 417.542