Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g06165 ATGTCATCTCTTACTACGATCTCTGCTGCACAAAATCAATTTAACGGCTCTCTTCCAGCCAACATGTTTAACAACCTCCCTAATCTCCAAGTGTTTTCAATTGGTGATAATTATATTTCAGGTCTAATGCCCACTTCTGTTGCCAATGCTTCTACCCTGACAGAACTTGGTGTCAGGAAAAACTATTTTGTCGGAAAAATTCCAAGTCTTGGGAGGCTAAAATATCTTTGGTGGATAAATTTGGAAACAAATAATTTTGGTTACAATTCACGTAATGACTTAGAATTTTTGAAATCATTGATAAACTGTAGTAAGTTGGAAGTGGTTTCTTTATCCTATAATAATTTTGGAGGTAGTTTGTCAAGTTCCATAGGCAACTTATCCACCCAACTTAGTCGACTATATCTTGGGTATAATCAAATATATGGGAAAATTCCTTTAGAATTAGGAAATCTAAATAGTTTAATTCTCTTAAACATGCAAGATAATCATTTTGAAGGGAGAATTCCTTCATCTATCAGGAAGTTTCAAAAGCTGCAAGTGTTAAATTTGGCTGGGAACAAGTTGTCAGATGAAATACCATCCTTTATAGGAAACCTTAGTCGGCTGTTTCGTTTGAGTTTACGAAATAATATGTTAGAGGGAACTATTCCTTCAAGTATAGGGAACTGCCAAAACATACAAATGTTAGACCTTTCAAAAAACAACCTTAGAGGAGTCATACCCCCAGAGGTCTTCAGCATTTCATCTTTAACAATAGGATTGTTCTTATCACAAAACTTTTTGAGTGGCAGCCTACCTGATGAACTCGACCATCTACAAAATATTGTGACGATTGATGTCTCTAAAAATCGTTTGTCTGGTAAAATTCCTATAACCTTGGGGAAATGCATATGCTTAGAATACCTTATTTTGGCAAGGAATTCATTCAATGGAAGCATACCTCACTCTTTGGAATCTCTCAAAGTTCTTAAAGTGTTGGATCTTTCTAAAAATCAACTATCTGGGTTGATTCCAAAAGCTTTGCAAAATATTCCTTTCTTTGAATATTTCAATGTATCGTTCAACATGTTGGAAGGAGAGGTACCAACTAAAGGTGTCTTTAGAAATGCAAGTGCATTTACAGTGATTGGAAACAATAAGCTTTGTGGAGGAATTTTGGAGTTACATCTACCACCATGCCCTATTAAAGGTACAAAACACTATAATTTGAAGTTGATGGTAGGGATAGTTAGTGTAGTTTCTTTTCTTTTCATTATGCTATCTATTATGACAATCTATTGGAGGAGGGGAACGATAAAAAAACCATCTTTTGATTCACCAATAATTGATCAGATGATTAAGGTTTCGTACCAAAACCTACACAGGGCAACCAATGGGTTCTCGAAAAGCAACTTGATAGGATCTGGAAATTTTGGTTCTGTCTACAAAGGAACACTTGAGTCGATAGAAGGATTTGTTGCCATAAAAGTCCTAAACCTTACAAAGAAGGGATCTCACAAGAGTTTCATTGCTGAATATTATAAAGGAGGTGAGTTTAAAGCTCTTGCATTTGAGTACATGAGAAATGGAAACTTAGAAAGTTGGTTGCATCCCACAACAGAAATGACAGATGAGCCCAGATCATTAAATCTAGAGCAAAGGTTCAATATTATTATTGATGTTGCGTCAGCGTTTTGTTATCTTCACTACGAATGCGAGCAACCTGTCATTCATTGTGATTTAAAGCCAGCAAATGTTCTTCTTAATGACTCCCTGGTAGCACAAGTGAGTGATTTTGGCTTAGCAAGGTTGGTCTCAAGTGCCGGTATCTCTCTGAAGCAAAGTAGCACAATTGGAGTGATGGGGACAGTTGGATATGCACCCCTAGAGTACGGAATGGGTTTGGAAGTGTCGATTGAAGGAGACATGTATAGTTTTGGAATACTGGTATTAGAAATGTTAACTGGAAGGAGACCCACAGATGAAATGTTTAAAGATAATCATAATCTCCATAATTATGTTAATCACTCAATTCCAAATCACCTTTTCCAGATTGTGGACCGGTCTATTCTCCCCATTGAATTAGAAAACAATAGTGAGAATGGGAACTCTTGTAGTATAGATCCTAATGTAAAAAAATGTCTACTTTCAATATTTAAGATTGCACTTTCTTGTTCAGTGGAATCACCAAAAGAAAGAATGAACATGGTCGATGTTATAAGGGAACTCGACATCATTAAAAGTTTCTTTCCTACCAAGGTTCAACGAAGGCATGGTGCATTACAACCACAAATCACATGA 2283 0.3618 MSSLTTISAAQNQFNGSLPANMFNNLPNLQVFSIGDNYISGLMPTSVANASTLTELGVRKNYFVGKIPSLGRLKYLWWINLETNNFGYNSRNDLEFLKSLINCSKLEVVSLSYNNFGGSLSSSIGNLSTQLSRLYLGYNQIYGKIPLELGNLNSLILLNMQDNHFEGRIPSSIRKFQKLQVLNLAGNKLSDEIPSFIGNLSRLFRLSLRNNMLEGTIPSSIGNCQNIQMLDLSKNNLRGVIPPEVFSISSLTIGLFLSQNFLSGSLPDELDHLQNIVTIDVSKNRLSGKIPITLGKCICLEYLILARNSFNGSIPHSLESLKVLKVLDLSKNQLSGLIPKALQNIPFFEYFNVSFNMLEGEVPTKGVFRNASAFTVIGNNKLCGGILELHLPPCPIKGTKHYNLKLMVGIVSVVSFLFIMLSIMTIYWRRGTIKKPSFDSPIIDQMIKVSYQNLHRATNGFSKSNLIGSGNFGSVYKGTLESIEGFVAIKVLNLTKKGSHKSFIAEYYKGGEFKALAFEYMRNGNLESWLHPTTEMTDEPRSLNLEQRFNIIIDVASAFCYLHYECEQPVIHCDLKPANVLLNDSLVAQVSDFGLARLVSSAGISLKQSSTIGVMGTVGYAPLEYGMGLEVSIEGDMYSFGILVLEMLTGRRPTDEMFKDNHNLHNYVNHSIPNHLFQIVDRSILPIELENNSENGNSCSIDPNVKKCLLSIFKIALSCSVESPKERMNMVDVIRELDIIKSFFPTKVQRRHGALQPQIT 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g06165 760 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Vifa1g06165 760 Gene3D Ribonuclease Inhibitor 1 394 IPR032675 -
Vifa1g06165 760 ProSitePatterns Protein kinases ATP-binding region signature. 467 490 IPR017441 GO:0005524
Vifa1g06165 760 SUPERFAMILY Protein kinase-like (PK-like) 437 738 IPR011009 -
Vifa1g06165 760 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 521 750 - -
Vifa1g06165 760 Gene3D Transferase(Phosphotransferase) domain 1 521 752 - -
Vifa1g06165 760 SMART serkin_6 461 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06165 760 SMART LRR_typ_2 200 224 IPR003591 -
Vifa1g06165 760 SMART LRR_typ_2 321 344 IPR003591 -
Vifa1g06165 760 SMART LRR_typ_2 176 199 IPR003591 -
Vifa1g06165 760 SMART LRR_typ_2 26 49 IPR003591 -
Vifa1g06165 760 SMART LRR_typ_2 1 25 IPR003591 -
Vifa1g06165 760 PRINTS Leucine-rich repeat signature 321 334 - -
Vifa1g06165 760 PRINTS Leucine-rich repeat signature 227 240 - -
Vifa1g06165 760 SUPERFAMILY RNI-like 2 190 - -
Vifa1g06165 760 PANTHER OS04G0122200 PROTEIN 1 735 - -
Vifa1g06165 760 FunFam LRR receptor-like serine/threonine-protein kinase EFR 92 400 - -
Vifa1g06165 760 ProSiteProfiles Protein kinase domain profile. 461 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06165 760 Gene3D Phosphorylase Kinase; domain 1 429 513 - -
Vifa1g06165 760 Pfam Protein kinase domain 513 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g06165 760 SUPERFAMILY L domain-like 129 384 - -
Vifa1g06165 760 Pfam Leucine rich repeat 300 358 IPR001611 GO:0005515
Vifa1g06165 760 Pfam Leucine rich repeat 178 237 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g06165 Vifa-Chr1 963510966 963513418 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g06165 1 744 Receptor kinase-like Gene Family AT3G47570 42.638 0.0 580
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vifa1g06165 Pkinase 3.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g06165 - - gmx:100792724 895.96